SCN Proteipedia

Hg_chrom8_TN10mRNA_15876

Organism: Heterodera glycines Gene Locus: chr8:6266585-6269516 Feature type: polypeptide

Protein Sequence

Length: 490

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.807	1.376	0.928	1.196	1.122	0.68	0.462	1.429	1.27	1.131	0.835	1.921	1.587	0.628	1.541	1.341	0.836	1.113	0.314	0.24	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom8_TN10gene_15005	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	19-Not_Clustered	0.957

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	nucleus	—	RRRKRRV,KKCISVGMDATELNIERRR,KRAALLASLRRHLNRKLRD	—	—	—	—	—	—	0.000	—	—	0.926	0.102	0.019	0.399	0.019	0.026	0.025	0.008	0.021	0.012

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0012126	1.000	1.000	Hsc_gene_6334.t2	Hsc_gene_6334.t1;Hsc_gene_6334.t2	—	Q21878.4 Nuclear hormone receptor family member nhr-1 [Caenorhabditis elegans]	KAH7730600.1 CRE-NHR-17 protein [Aphelenchus avenae]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	Yes	GO:0000978\|GO:0003700\|GO:0006355\|GO:0008270\|GO:0043565	GO:0008150_0.869\|GO:0065007_0.809\|GO:0050789_0.803\|GO:0005575_0.786\|GO:0110165_0.771\|GO:0009987_0.769\|GO:0003674_0.763\|GO:0050794_0.741\|GO:0005622_0.700\|GO:0043226_0.697\|GO:0005488_0.694\|GO:0043229_0.684\|GO:0008152_0.664\|GO:0043170_0.664\|GO:0009058_0.658\|GO:0044237_0.654\|GO:0044249_0.654\|GO:0009059_0.644\|GO:0010467_0.644\|GO:0019222_0.644\|GO:0031323_0.644\|GO:0060255_0.627\|GO:0009889_0.619\|GO:0031326_0.619\|GO:0010556_0.613\|GO:0044238_0.607\|GO:0010468_0.604\|GO:0006139_0.596\|GO:0080090_0.590\|GO:0034654_0.585\|GO:0090304_0.583\|GO:0141187_0.583\|GO:0016070_0.576\|GO:0032774_0.576\|GO:0097159_0.571\|GO:0016020_0.557\|GO:0019219_0.554\|GO:0006351_0.545\|GO:0051252_0.542\|GO:2001141_0.538\|GO:0006355_0.535\|GO:0003676_0.526	IPR000536+249-484_274-466_285-455+\|IPR001628+127-198_127-202_129-196_130-146_130-156_146-161_179-187_187-195+\|IPR001723+191-201_286-307_381-396_443-460+\|IPR013088+120-226+\|IPR035500+250-486_253-480+\|IPR049636+130-197+\|IPR050274+120-469+	SM00399+127-198+\|SM00430+285-455+	PF00104+274-466+Ligand-binding_domain_of_nuclear_hormone_receptor\|PF00105+129-196+Zinc_finger,_C4_type_(two_domains)	G3DSA:3.30.50.10:FF:000030+122-225+Nuclear_Hormone_Receptor_family	PTHR24083+120-469+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	—	—	1.000	1-490	8hbm_F	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.773	55253.410	8.164	13.000	27.755	9.796	50.816	49.184	15.918	11.837	50.408

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	darkred	grey	1470.271	1683.126	1074.450	991.313	1382.330	1361.929	2504.805	1883.939	415.033	2040.451	1343.843

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.878	-0.901	—	0.448	—	0.890	0.362	0.554	-2.414	—	—	—	—

No JSON data available for plots.

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