SCN Proteipedia

Hg_chrom8_TN10mRNA_15883

Organism: Heterodera glycines Gene Locus: chr8:6291507-6293631 Feature type: polypeptide

Protein Sequence

Length: 340

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	1.026	1.231	0.695	0.406	1.324	1.357	0.91	0.735	0.85	0.914	0.758	1.73	1.471	1.075	1.441	1.134	0.771	0.847	0.226	1.038	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom8_TN10gene_15012	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	4-Egg_Male	1.000

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	cytoplasm\|nucleus	—	KKPR	—	—	—	—	—	—	0.000	—	—	0.660	0.083	0.001	0.553	0.157	0.078	0.199	0.017	0.025	0.020

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0012129	1.000	1.000	Hsc_gene_6337.t1	Hsc_gene_6337.t1;Hsc_gene_6340.t1;Hsc_gene_6343.t1;Hsc_gene_6343.t2	—	Q19584.1 Ubiquitin fusion degradation protein 1 homolog [Caenorhabditis elegans]	KAH7725498.1 ubiquitin fusion degradation protein UFD1 containing protein [Aphelenchus avenae]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0006511	GO:0008150_0.939\|GO:0009987_0.886\|GO:0003674_0.851\|GO:0005575_0.847\|GO:0110165_0.844\|GO:0050896_0.802\|GO:0051716_0.772\|GO:0005622_0.760\|GO:0016020_0.752\|GO:0005488_0.712\|GO:0043226_0.709\|GO:0008152_0.695\|GO:0043170_0.695\|GO:0043229_0.694\|GO:0044238_0.686\|GO:0005737_0.676\|GO:0043227_0.658\|GO:0019538_0.650\|GO:0065007_0.649\|GO:0043231_0.644\|GO:0050789_0.632\|GO:0006950_0.628\|GO:0009056_0.621\|GO:0050794_0.619\|GO:0009057_0.616\|GO:0006508_0.606\|GO:0030163_0.604\|GO:0033554_0.602\|GO:0051603_0.601\|GO:0071944_0.600\|GO:0010498_0.599\|GO:0005886_0.576\|GO:0005515_0.575\|GO:0051179_0.572\|GO:0042221_0.546\|GO:0051641_0.539\|GO:0033036_0.522\|GO:0070727_0.522\|GO:0008104_0.521\|GO:0032991_0.514\|GO:1901698_0.513\|GO:0034976_0.501	IPR004854+18-287_21-195+\|IPR042299+8-120+	—	PF03152+21-195+Ubiquitin_fusion_degradation_protein_UFD1	—	PTHR12555+18-287+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	201-340	1.000	1-200	2yuj_A	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.831	37878.640	7.734	3.500	25.294	10.588	48.529	51.471	13.529	11.765	50.588

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	black	yellow	1931.785	2518.171	2468.228	1819.617	1805.967	2191.490	2359.750	3096.630	1863.891	956.197	1345.209

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.258	-0.606	-0.332	—	0.294	—	0.393	-0.248	—	—	—	—	—

No JSON data available for plots.

Back to Browser