Hg_chrom8_TN10mRNA_15884
Organism: Heterodera glycines Gene Locus: chr8:6293866-6294924 Feature type: polypeptideProtein Sequence
Length: 193
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.723 | 1.566 | 1.036 | 0.893 | 1.554 | 0.797 | 0.74 | 1.295 | 1.957 | 1.19 | 0.55 | 0.914 | 1.007 | 0.697 | 1.163 | 1.258 | 0.68 | 0.785 | 1.196 | 0.61 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_15013
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
10-Pre_planta
|
0.997
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal|nuclear_export_signal
|
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.618
|
0.095
|
0.011
|
0.717
|
0.298
|
0.227
|
0.299
|
0.005
|
0.245
|
0.090
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012130
|
1.000
|
1.000
|
Hsc_gene_6344.t1
|
Hsc_gene_6344.t1;Hsc_gene_6344.t2
|
— |
Q567Y6.1 Intraflagellar transport protein 22 homolog [Danio rerio]
|
KAI3411977.1 Intraflagellar transport protein 22 [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.833|GO:0110165_0.820|GO:0016020_0.738|GO:0043226_0.712|GO:0043227_0.699|GO:0005622_0.679|GO:0008150_0.670|GO:0071944_0.623|GO:0005886_0.611|GO:0043229_0.598|GO:0009987_0.592|GO:0032991_0.526|GO:0005737_0.513
|
IPR027417+1-191_12-138+
|
— |
PF08477+17-124+Ras_of_Complex,_Roc,_domain_of_DAPkinase
|
— |
PTHR24073+15-133+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-4
|
1.000
|
5-193
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.589
|
21657.340
|
4.616
|
-8.500
|
26.943
|
9.845
|
49.741
|
50.259
|
11.917
|
15.026
|
49.223
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
brown
|
152.039
|
483.983
|
466.181
|
151.970
|
63.360
|
47.366
|
71.567
|
309.065
|
41.797
|
36.264
|
38.635
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.284
|
-1.808
|
-1.508
|
-1.293
|
-0.406
|
0.604
|
2.605
|
-1.971
|
— | — | — | — | — |
No JSON data available for plots.