SCN Proteipedia

Hg_chrom8_TN10mRNA_15885

Organism: Heterodera glycines Gene Locus: chr8:6303858-6316938 Feature type: polypeptide

Protein Sequence

Length: 1,904

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	1.197	0.501	0.984	0.978	0.849	1.118	0.782	1.077	0.77	1.689	0.255	0.741	1.065	1.222	1.608	1.321	0.818	1.082	0.889	0.479	0.0

Composition

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom8_TN10gene_15014	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	28-Egg	0.999

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	membrane_bound	signal_peptide\|transmembrane_domain	cell_membrane	nucleus	RKCVDAEDVKRKCRNERRK	—	—	—	—	—	0.799	0.044	1.000	—	0.218	0.032	0.003	0.246	0.272	0.492	0.370	0.029	0.783	0.076

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0012131	1.000	1.000	Hsc_gene_6346.t1	Hsc_gene_6346.t1;Hsc_gene_8495.t1	—	O45657.5 Plexin-2 [Caenorhabditis elegans]	KAI1701687.1 plexin cytoplasmic rasGAP domain-containing protein [Ditylenchus destructor]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0005515\|GO:0017154\|GO:0071526	GO:0008150_0.890\|GO:0005575_0.868\|GO:0110165_0.862\|GO:0009987_0.808\|GO:0003674_0.736\|GO:0065007_0.710\|GO:0032502_0.694\|GO:0048856_0.694\|GO:0050789_0.688\|GO:0032501_0.682\|GO:0050794_0.661\|GO:0016020_0.656\|GO:0007275_0.633\|GO:0048731_0.613\|GO:0016043_0.601\|GO:0071840_0.601\|GO:0007399_0.564\|GO:0050896_0.560\|GO:0009653_0.533\|GO:0030154_0.531\|GO:0048468_0.531\|GO:0048869_0.531\|GO:0051716_0.529\|GO:0071944_0.524\|GO:0005886_0.513\|GO:0022008_0.509\|GO:0007154_0.503\|GO:0023052_0.501	IPR001627+25-475_50-459+\|IPR002165+487-520+\|IPR002909+823-914_824-893_915-1001_916-1000_1003-1104+\|IPR008936+1258-1515_1348-1784_1653-1896+\|IPR013548+1307-1858+\|IPR013783+492-629_638-774_786-915_916-1005+\|IPR014756+821-911_913-1002+\|IPR015943+38-474+\|IPR016201+477-525_627-676_772-822+\|IPR031148+21-340+\|IPR036352+40-434+\|IPR041019+533-617+\|IPR046800+1490-1576+	SM00423+477-525_627-676_772-822+\|SM00429+823-914_915-1001_1003-1104+\|SM00630+50-459+	PF01437+487-520+Plexin_repeat\|PF01833+824-893_916-1000+IPT/TIG_domain\|PF08337+1307-1858+Plexin_cytoplasmic_RasGAP_domain\|PF17960+533-617+TIG_domain\|PF20170+1490-1576+Plexin_cytoplasmic_RhoGTPase-binding_domain	—	PTHR22625+21-340+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1606-1664	2.000	1-1605;1665-1904	3q3j_A	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.705	207106.380	6.595	2.500	22.216	8.771	42.962	57.038	11.712	10.504	54.989

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	black	violet	3364.687	22706.930	3928.173	2156.148	1358.295	2384.707	1272.082	2182.596	376.181	942.521	699.804

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-2.761	-3.534	-0.756	-0.699	0.827	-0.897	—	-0.638	—	—	—	—	—

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