Hg_chrom8_TN10mRNA_15886
Organism: Heterodera glycines Gene Locus: chr8:6317343-6322293 Feature type: polypeptideProtein Sequence
Length: 974
(Signal peptide: 1-24)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.003 | 1.003 | 0.784 | 0.389 | 1.266 | 0.658 | 0.721 | 1.129 | 0.593 | 1.276 | 0.498 | 0.785 | 1.426 | 1.244 | 1.907 | 1.129 | 0.959 | 1.12 | 1.974 | 0.513 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_15015
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
7-ppJ2
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
membrane_bound
|
signal_peptide|transmembrane_domain
|
cell_membrane
|
nucleus
|
KRRR,REKRQKTREK,RRVLLDGGKLLRIRALKR,RRLSGAMDSKEREKRQKTR
|
50-70
|
0.967
|
— | — |
1-24
|
0.965
|
1.000
|
1.000
|
1.000
|
0.146
|
0.017
|
0.030
|
0.244
|
0.189
|
0.337
|
0.350
|
0.064
|
0.852
|
0.108
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012132
|
1.000
|
1.000
|
Hsc_gene_6347.t1
|
Hsc_gene_6347.t1
|
— |
P20241.2 Neuroglian [Drosophila melanogaster]
|
KAI3411974.1 IG [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0008150_0.829|GO:0005575_0.808|GO:0110165_0.808|GO:0009987_0.770|GO:0016020_0.696|GO:0071944_0.625|GO:0005886_0.607|GO:0003674_0.512|GO:0032501_0.509
|
IPR003598+39-108_136-202_233-296+|IPR003599+33-119_130-213_224-307+|IPR003961+310-401_310-405_312-418_421-508_422-509_423-522_525-611_526-621_527-615_527-624_625-722_626-707_626-708_627-710_722-807_722-819+|IPR007110+20-117_123-211_215-291+|IPR013098+32-118_131-212+|IPR013783+27-121_122-212_216-301_302-420_421-520_521-626_627-728+|IPR036116+308-510_527-710_713-799+|IPR036179+31-120_123-215_222-314+
|
SM00060+310-401_421-508_525-611_626-707_722-807+|SM00408+39-108_136-202_233-296+|SM00409+33-119_130-213_224-307+
|
PF00041+527-615_627-710+Fibronectin_type_III_domain|PF07679+32-118_131-212+Immunoglobulin_I-set_domain
|
G3DSA:2.60.40.10:FF:000035+416-518+Contactin_1
|
PTHR44170+32-709+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
915-974
|
1.000
|
1-914
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.808
|
109775.230
|
8.527
|
18.000
|
26.797
|
11.704
|
47.433
|
52.567
|
14.887
|
11.910
|
52.053
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
grey
|
498.305
|
654.706
|
1865.890
|
712.681
|
171.409
|
149.504
|
244.875
|
936.484
|
384.168
|
116.127
|
231.002
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.283
|
— |
-1.281
|
-2.088
|
— |
0.723
|
2.549
|
-1.795
|
— | — | — | — | — |