Hg_chrom8_TN10mRNA_15887
Organism: Heterodera glycines Gene Locus: chr8:6323093-6325848 Feature type: polypeptideProtein Sequence
Length: 653
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.837 | 0.819 | 0.919 | 0.634 | 1.302 | 0.903 | 0.766 | 1.378 | 1.259 | 1.366 | 0.859 | 1.171 | 1.276 | 0.854 | 1.219 | 1.028 | 0.904 | 0.951 | 0.942 | 0.946 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_15016
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
25-Eggs_Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
endoplasmic_reticulum
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.074
|
0.302
|
0.154
|
0.175
|
0.820
|
0.133
|
0.184
|
0.574
|
0.197
|
0.176
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012133
|
1.000
|
1.000
|
Hsc_gene_6348.t1
|
Hsc_gene_6348.t1
|
— |
Q8CHN6.1 Sphingosine-1-phosphate lyase 1 [Rattus norvegicus]
|
KAI1701359.1 pyridoxal-dependent decarboxylase conserved domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016830|GO:0019752|GO:0030170
|
GO:0008150_0.818|GO:0005575_0.724|GO:0110165_0.724|GO:0009987_0.721|GO:0003674_0.652|GO:0005622_0.620|GO:0016020_0.586|GO:0005737_0.542|GO:0008152_0.520|GO:0043226_0.507
|
IPR002129+167-435+|IPR015421+142-403+|IPR015422+111-506+|IPR015424+100-504+|IPR050477+69-552+
|
— |
PF00282+167-435+Pyridoxal-dependent_decarboxylase_conserved_domain
|
G3DSA:3.40.640.10:FF:000020+145-403+sphingosine-1-phosphate_lyase_1
|
PTHR42735+69-552+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
582-653
|
1.000
|
1-581
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.591
|
73554.970
|
6.593
|
1.000
|
27.259
|
11.792
|
47.014
|
52.986
|
14.395
|
12.864
|
47.473
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
brown
|
2179.436
|
3988.308
|
2873.863
|
2253.351
|
2143.723
|
2385.947
|
3231.695
|
2607.882
|
2391.430
|
434.669
|
1273.281
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.701
|
-0.961
|
-0.243
|
-0.104
|
0.169
|
0.448
|
— |
0.453
|
2.343
|
— |
2.465
|
— | — |
No JSON data available for plots.