Hg_chrom8_TN10mRNA_15891
Organism: Heterodera glycines Gene Locus: chr8:6333072-6333917 Feature type: polypeptideProtein Sequence
Length: 214
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.598 | 0.652 | 1.699 | 0.161 | 2.103 | 0.959 | 0.779 | 1.869 | 0.727 | 0.568 | 1.487 | 2.749 | 0.779 | 0.809 | 1.144 | 1.335 | 0.996 | 0.566 | 0.0 | 0.55 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_15020
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
22-J4_Male
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal|nuclear_export_signal
|
cytoplasm|nucleus
|
— |
RPRR,EKKRK,KKRKTHYNEGAFLKKMRER
|
— | — | — | — | — | — |
0.000
|
— | — |
0.679
|
0.297
|
0.019
|
0.785
|
0.061
|
0.089
|
0.099
|
0.005
|
0.210
|
0.018
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012136
|
1.000
|
1.000
|
Hsc_gene_6352.t1
|
Hsc_gene_6352.t1
|
— |
P50411.2 Protein phosphatase inhibitor 2 [Rattus norvegicus]
|
KAI1700225.1 protein phosphatase inhibitor 2 (IPP-2) domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004864|GO:0009966|GO:0043666
|
GO:0003674_0.847|GO:0005488_0.839|GO:0005515_0.787|GO:0005575_0.651|GO:0110165_0.650|GO:0098772_0.511
|
IPR007062+70-213_78-212+
|
— |
PF04979+78-212+Protein_phosphatase_inhibitor_2_(IPP-2)
|
— |
PTHR12398+70-213+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
full
|
1-214
|
0.000
|
— | — | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.730
|
24243.620
|
4.848
|
-10.000
|
41.121
|
8.411
|
63.084
|
36.916
|
19.159
|
21.963
|
47.664
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
magenta
|
1954.867
|
1412.260
|
1536.975
|
1391.511
|
1691.576
|
2031.408
|
1586.615
|
2267.052
|
1326.753
|
3088.454
|
2333.439
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.107
|
-0.158
|
— |
0.250
|
0.279
|
-0.345
|
— |
-0.371
|
— | — | — | — | — |
No JSON data available for plots.