Hg_chrom8_TN10mRNA_15892
Organism: Heterodera glycines Gene Locus: chr8:6334305-6338042 Feature type: polypeptideProtein Sequence
Length: 638
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.747 | 1.239 | 1.254 | 1.135 | 1.28 | 1.166 | 1.045 | 1.176 | 0.766 | 1.144 | 0.879 | 1.567 | 1.306 | 0.904 | 1.343 | 0.985 | 0.719 | 0.712 | 0.844 | 0.369 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_15021
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
25-Not_Clustered
|
0.588
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
nucleus
|
— |
KKRGKKE
|
— | — | — | — | — | — |
0.000
|
— | — |
0.533
|
0.138
|
0.027
|
0.389
|
0.170
|
0.159
|
0.230
|
0.106
|
0.374
|
0.035
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012137
|
1.000
|
1.000
|
Hsc_gene_6353.t1
|
Hsc_gene_6353.t1
|
— | — |
KAI3411967.1 Protein Xrp2 [Globodera pallida]
|
No
|
-0.240
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005096
|
GO:0005575_0.789|GO:0110165_0.782|GO:0008150_0.730|GO:0005622_0.720|GO:0009987_0.672|GO:0043226_0.596|GO:0016020_0.564|GO:0043229_0.563|GO:0005737_0.545
|
IPR006599+334-371_372-406+|IPR012945+326-443+|IPR016098+304-478+|IPR017901+295-445+|IPR039093+228-513+
|
SM00673+334-371_372-406+
|
PF07986+326-443+Tubulin_binding_cofactor_C
|
— |
PTHR15440+228-513+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-247
|
1.000
|
248-638
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.672
|
71042.830
|
5.795
|
-6.500
|
29.310
|
9.404
|
50.470
|
49.530
|
14.734
|
14.577
|
51.411
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
violet
|
897.408
|
912.511
|
1111.788
|
924.136
|
775.960
|
696.745
|
941.624
|
902.896
|
398.614
|
1277.578
|
900.879
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
-0.119
|
-0.157
|
-0.284
|
— |
0.445
|
0.267
|
— | — | — | — | — | — |
No JSON data available for plots.