Hg_chrom8_TN10mRNA_15895
Organism: Heterodera glycines Gene Locus: chr8:6345749-6348572 Feature type: polypeptideProtein Sequence
Length: 482
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.037 | 1.11 | 0.717 | 1.073 | 1.21 | 1.224 | 0.445 | 1.452 | 0.876 | 1.486 | 0.629 | 1.464 | 1.383 | 0.838 | 1.651 | 1.274 | 0.612 | 0.943 | 0.798 | 0.488 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_15024
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
25-Not_Clustered
|
0.959
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal|nuclear_export_signal
|
cytoplasm
|
— |
KRHR,KRRP
|
114-134
|
0.991
|
— | — | — | — |
0.000
|
— | — |
0.301
|
0.194
|
0.008
|
0.680
|
0.108
|
0.225
|
0.186
|
0.021
|
0.318
|
0.031
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012140
|
1.000
|
1.000
|
Hsc_gene_6357.t2
|
Hsc_gene_6357.t1;Hsc_gene_6357.t2;Hsc_gene_6357.t3
|
— |
Q6DHR3.2 Ras-GEF domain-containing family member 1B-A [Danio rerio]
|
KAH7729370.1 Protein R05G6.10 [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005085|GO:0007264
|
GO:0008150_0.774|GO:0005575_0.754|GO:0110165_0.753|GO:0003674_0.727|GO:0009987_0.681|GO:0065007_0.647|GO:0005488_0.640|GO:0005622_0.628|GO:0050789_0.627|GO:0050794_0.607|GO:0005515_0.590|GO:0050896_0.587|GO:0051716_0.542|GO:0007154_0.533|GO:0023052_0.532
|
IPR000651+59-184_61-184_66-157+|IPR001895+219-467_223-466_227-400+|IPR008937+13-468+|IPR023578+70-464+|IPR036964+223-480+
|
SM00147+219-467+|SM00229+59-184+
|
PF00617+227-400+RasGEF_domain|PF00618+66-157+RasGEF_N-terminal_motif
|
— |
PTHR23113+13-468+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-58;482-482
|
1.000
|
59-481
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.744
|
54568.490
|
8.118
|
12.000
|
26.349
|
10.581
|
48.548
|
51.452
|
15.145
|
11.203
|
47.718
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
orange
|
678.985
|
816.719
|
1077.349
|
840.607
|
451.290
|
474.313
|
895.544
|
582.638
|
603.447
|
591.049
|
596.363
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.170
|
— |
-0.249
|
-0.928
|
— |
0.927
|
— |
0.763
|
— | — | — | — | — |
No JSON data available for plots.