Hg_chrom8_TN10mRNA_15897
Organism: Heterodera glycines Gene Locus: chr8:6358553-6360354 Feature type: polypeptideProtein Sequence
Length: 420
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.886 | 0.941 | 1.039 | 0.493 | 0.714 | 1.099 | 0.879 | 1.429 | 1.111 | 1.802 | 0.649 | 1.541 | 1.587 | 0.778 | 1.166 | 1.259 | 0.507 | 0.758 | 1.465 | 0.84 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_15026
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
12-Not_Clustered
|
0.315
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm|nucleus
|
— |
KKHK,RIVKRRI
|
— | — | — | — | — | — |
0.000
|
— | — |
0.530
|
0.254
|
0.011
|
0.708
|
0.270
|
0.366
|
0.132
|
0.159
|
0.125
|
0.031
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012142
|
1.000
|
1.000
|
Hsc_gene_6359.t1
|
Hsc_gene_6359.t1
|
— |
Q9Y0Y7.1 LanC-like protein 3 homolog [Drosophila melanogaster]
|
KAI6200393.1 LanC-like protein 3-like protein [Aphelenchoides besseyi]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005975|GO:0031179
|
GO:0008150_0.942|GO:0009987_0.879|GO:0003674_0.859|GO:0050896_0.790|GO:0005575_0.760|GO:0110165_0.760|GO:0051716_0.753|GO:0016020_0.694|GO:0065007_0.647|GO:0050789_0.631|GO:0071944_0.621|GO:0050794_0.609|GO:0005886_0.606|GO:0005488_0.591|GO:0007154_0.561|GO:0042221_0.561|GO:0023052_0.553|GO:0007165_0.546|GO:0070887_0.530
|
IPR007822+57-417_58-76_61-414_167-182_230-246_289-309_336-349_387-404+|IPR012341+2-417+|IPR020464+11-24_197-212_219-231_267-282_306-327_352-370_403-417+
|
SM01260+57-417+
|
PF05147+61-414+Lanthionine_synthetase_C-like_protein
|
— |
PTHR12736+13-414+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-420
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.759
|
47119.100
|
7.505
|
6.000
|
22.857
|
13.333
|
43.095
|
56.905
|
12.857
|
10.000
|
47.143
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
lightgreen
|
553.246
|
691.971
|
806.648
|
570.696
|
564.312
|
499.231
|
1114.081
|
717.038
|
242.669
|
376.956
|
319.405
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
-0.415
|
-0.390
|
— | — |
1.169
|
0.418
|
0.778
|
— | — | — | — | — |
No JSON data available for plots.