Hg_chrom8_TN10mRNA_15898
Organism: Heterodera glycines Gene Locus: chr8:6360548-6361515 Feature type: polypeptideProtein Sequence
Length: 219
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.584 | 0.956 | 0.996 | 0.157 | 1.294 | 0.82 | 0.815 | 1.142 | 1.421 | 1.604 | 1.937 | 0.806 | 0.254 | 0.615 | 1.305 | 0.652 | 1.048 | 1.107 | 0.702 | 0.806 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_15027
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
17-Not_Clustered
|
0.614
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
RKRK,KKRKR,ERTLKKGGKK,RKELNETEEKGKGNSKKRK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.801
|
0.236
|
0.001
|
0.408
|
0.074
|
0.017
|
0.151
|
0.002
|
0.013
|
0.046
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012143
|
1.000
|
1.000
|
Hsc_gene_6360.t1
|
— | — |
Q6DEW6.1 RNA exonuclease 4 [Xenopus tropicalis]
|
KAF7639858.1 Exonuclease domain-containing protein [Meloidogyne graminicola]
|
No
|
-0.040
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003676|GO:0004527|GO:0006364|GO:0008408
|
GO:0005575_0.805|GO:0110165_0.796|GO:0005622_0.771|GO:0008150_0.659|GO:0043226_0.654|GO:0043229_0.644|GO:0016020_0.620|GO:0043227_0.583|GO:0043231_0.567|GO:0003674_0.548|GO:0009987_0.543|GO:0008152_0.528
|
IPR012337+48-211+|IPR013520+48-211_51-202+|IPR036397+44-218+|IPR037431+51-202+|IPR047021+16-207+
|
SM00479+48-211+
|
PF00929+51-202+Exonuclease
|
G3DSA:3.30.420.10:FF:000007+45-219+Interferon-stimulated_exonuclease_gene_20
|
PTHR12801+16-207+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-40;219-219
|
1.000
|
41-218
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.575
|
24837.860
|
10.334
|
15.500
|
34.703
|
6.849
|
52.968
|
47.032
|
21.461
|
13.242
|
43.379
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
yellow
|
1475.207
|
1002.517
|
1297.459
|
1240.589
|
1263.611
|
1144.311
|
1199.232
|
1280.510
|
2789.140
|
1201.590
|
1881.968
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.142
|
0.170
|
— | — |
-0.128
|
— | — | — | — | — | — | — | — |
No JSON data available for plots.