Hg_chrom8_TN10mRNA_15899
Organism: Heterodera glycines Gene Locus: chr8:6361633-6363124 Feature type: polypeptideProtein Sequence
Length: 289
(Signal peptide: 1-23)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.563 | 0.966 | 0.377 | 3.937 | 0.807 | 1.952 | 0.989 | 0.692 | 1.307 | 0.888 | 0.944 | 0.407 | 1.442 | 1.198 | 1.483 | 0.989 | 0.284 | 0.786 | 0.799 | 0.712 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_15028
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
20-Not_Clustered
|
0.447
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
— |
extracellular
|
mitochondria
|
RCYKRKK,KKLRQICSRSLKGRRL,RRLICASQKVRKAGRCYKR
|
35-57
|
0.997
|
— | — |
1-23
|
0.856
|
0.674
|
0.000
|
0.000
|
0.229
|
0.334
|
0.053
|
0.243
|
0.070
|
0.126
|
0.146
|
0.041
|
0.194
|
0.921
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004790
|
1.000
|
2.000
|
Hsc_gene_6361.t1;Hsc_gene_6361.t2
|
Hsc_gene_6361.t1;Hsc_gene_6361.t2
|
— | — |
KAI3413232.1 Kunitz-type protease inhibitor 1 [Globodera pallida]
|
No
|
-0.070
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — |
IPR006149+75-118_123-169+|IPR006150+221-267+
|
SM00289+221-267+
|
PF01683+75-118_123-169+EB_module
|
— | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-289
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.765
|
32334.670
|
8.569
|
21.000
|
21.799
|
10.035
|
42.215
|
57.785
|
14.879
|
6.920
|
50.865
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
yellow
|
749.417
|
1101.635
|
1300.639
|
953.828
|
815.064
|
680.075
|
577.591
|
853.273
|
797.136
|
325.055
|
527.376
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
-0.345
|
-0.338
|
-0.258
|
-0.247
|
-0.227
|
— |
-0.421
|
— | — | — | — | — |