Hg_chrom8_TN10mRNA_15900
Organism: Heterodera glycines Gene Locus: chr8:6363844-6365392 Feature type: polypeptideProtein Sequence
Length: 372
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.969 | 1.063 | 0.587 | 0.742 | 0.269 | 0.345 | 0.704 | 0.269 | 2.389 | 1.889 | 0.489 | 1.581 | 1.792 | 1.034 | 0.768 | 1.19 | 1.146 | 1.1 | 1.034 | 0.633 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_15029
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
23-Female
|
0.998
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
transmembrane_domain
|
cell_membrane
|
— |
KRIR
|
— | — | — | — | — | — |
0.000
|
— | — |
0.064
|
0.229
|
0.011
|
0.097
|
0.440
|
0.360
|
0.225
|
0.012
|
0.794
|
0.020
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012144
|
1.000
|
1.000
|
Hsc_gene_6362.t1
|
Hsc_gene_6362.t1
|
— |
Q62633.1 Ileal sodium/bile acid cotransporter [Rattus norvegicus]
|
KAI1707913.1 sodium bile acid symporter family domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016020
|
GO:0005575_0.843|GO:0110165_0.843|GO:0016020_0.808|GO:0008150_0.762|GO:0071944_0.676|GO:0005886_0.668|GO:0009987_0.589|GO:0006810_0.568|GO:0051179_0.568|GO:0051234_0.568|GO:0055085_0.509
|
IPR002657+50-238+|IPR004710+35-336+|IPR038770+19-337+
|
— |
PF01758+50-238+Sodium_Bile_acid_symporter_family
|
— |
PTHR10361+35-336+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-372
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.859
|
40475.260
|
9.035
|
9.000
|
12.366
|
10.484
|
33.602
|
66.398
|
7.527
|
4.839
|
52.151
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
red
|
darkturquoise
|
920.896
|
581.570
|
576.951
|
568.598
|
713.152
|
857.664
|
1220.643
|
748.749
|
557.291
|
1635.705
|
1173.528
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.242
|
-0.169
|
— |
0.295
|
0.281
|
0.517
|
-0.298
|
0.844
|
— | — | — | — | — |
No JSON data available for plots.