SCN Proteipedia

Hg_chrom8_TN10mRNA_15901

Organism: Heterodera glycines Gene Locus: chr8:6365664-6369921 Feature type: polypeptide

Protein Sequence

Length: 999

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.629	1.071	1.019	0.483	1.535	1.335	0.453	0.901	0.912	1.339	1.32	1.766	0.945	0.943	1.9	0.729	0.673	0.865	1.463	0.824	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom8_TN10gene_15030	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	28-Egg	0.998

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	nucleus	—	RRRK,KRRRR,PWKKRRR,KKRRRLEKRK,KRKGRQKRMKRRKNER,RKVEGTQKRKGRQKRMKRR,RKGRQKRMKRRKNERLARK	—	—	—	—	—	—	0.000	—	—	0.781	0.274	0.016	0.320	0.041	0.032	0.037	0.025	0.059	0.016

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0012145	1.000	1.000	Hsc_gene_6363.t1	Hsc_gene_6363.t1	—	P91868.1 snRNA-activating protein complex subunit 4 homolog [Caenorhabditis elegans]	KAI1718536.1 myb-like DNA-binding domain-containing protein [Ditylenchus destructor]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	—	GO:0008150_0.956\|GO:0009987_0.893\|GO:0005575_0.820\|GO:0110165_0.820\|GO:0065007_0.779\|GO:0005622_0.768\|GO:0050789_0.767\|GO:0008152_0.754\|GO:0043170_0.754\|GO:0009058_0.743\|GO:0044237_0.737\|GO:0043226_0.735\|GO:0009059_0.732\|GO:0044249_0.732\|GO:0050794_0.725\|GO:0043229_0.724\|GO:0044238_0.723\|GO:0003674_0.719\|GO:0010467_0.713\|GO:0016020_0.710\|GO:0006139_0.687\|GO:0005488_0.675\|GO:0090304_0.669\|GO:0034654_0.665\|GO:0141187_0.661\|GO:0016070_0.658\|GO:0032774_0.650\|GO:0019222_0.641\|GO:0043227_0.641\|GO:0031323_0.628\|GO:0060255_0.627\|GO:0043231_0.610\|GO:0009889_0.606\|GO:0031326_0.605\|GO:0010468_0.604\|GO:0010556_0.604\|GO:0006351_0.599\|GO:0080090_0.593\|GO:0097159_0.565\|GO:0005634_0.553\|GO:0019219_0.553\|GO:0051252_0.547\|GO:0003676_0.546\|GO:0006355_0.542\|GO:2001141_0.542\|GO:0003677_0.501	IPR001005+129-245_246-287_246-294_297-349_298-344_298-347_300-345_348-399_352-401_354-396_355-399_404-453_407-451+\|IPR009057+247-343_351-446+\|IPR017884+351-393+\|IPR017930+298-339_348-403+\|IPR051575+38-827+	SM00717+129-245_246-294_297-349_352-401_404-453+	PF00249+298-344_354-396+Myb-like_DNA-binding_domain\|PF13921+250-291+Myb-like_DNA-binding_domain	—	PTHR46621+38-827+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-2;551-678;983-999	2.000	3-550;679-982	1gvd_A	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.744	117733.120	9.807	41.000	34.635	9.910	53.654	46.346	19.820	14.815	40.641

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	black	grey	1586.817	1872.362	1399.646	1300.098	1625.600	1285.031	1477.819	1543.476	2081.367	1442.285	1716.178

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.650	-0.663	—	0.291	-0.325	0.213	—	—	—	—	—	—	—

No JSON data available for plots.

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