Hg_chrom8_TN10mRNA_15904
Organism: Heterodera glycines Gene Locus: chr8:6371619-6373288 Feature type: polypeptideProtein Sequence
Length: 452
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.875 | 0.978 | 1.046 | 0.687 | 1.106 | 0.908 | 0.737 | 1.327 | 1.524 | 1.674 | 1.039 | 1.432 | 1.229 | 0.553 | 1.129 | 1.201 | 0.798 | 0.469 | 1.021 | 0.716 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_15033
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
26-J3_J4
|
0.974
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
mitochondrial_transit_peptide
|
mitochondrion
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.102
|
0.971
|
0.024
|
0.200
|
0.021
|
0.079
|
0.040
|
0.129
|
0.076
|
0.052
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012146
|
1.000
|
1.000
|
Hsc_gene_6364.t1
|
Hsc_gene_6364.t1
|
— |
Q9W107.1 Tyrosine--tRNA ligase, mitochondrial [Drosophila melanogaster]
|
KAI3411954.1 tRNA synthetases class I (W and Y) [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0000166|GO:0003723|GO:0004812|GO:0004831|GO:0005524|GO:0006418|GO:0006437
|
GO:0005575_0.831|GO:0110165_0.764|GO:0008150_0.719|GO:0016020_0.696|GO:0005622_0.655|GO:0005737_0.602|GO:0009987_0.587|GO:0043226_0.554|GO:0043229_0.528|GO:0043227_0.509|GO:0008152_0.506|GO:0043231_0.504
|
IPR001412+62-72+|IPR002305+53-355+|IPR002307+51-451_66-88_189-204_210-232_243-255+|IPR014729+3-249+|IPR024088+24-451+|IPR036986+359-452+
|
— |
PF00579+53-355+tRNA_synthetases_class_I_(W_and_Y)
|
— |
PTHR11766+24-451+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-452
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.678
|
50895.400
|
7.447
|
6.000
|
27.434
|
10.841
|
48.451
|
51.549
|
15.044
|
12.389
|
44.912
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
purple
|
yellow
|
742.775
|
634.692
|
586.461
|
648.579
|
815.855
|
793.180
|
599.974
|
825.906
|
828.543
|
788.990
|
805.941
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.343
|
— |
0.253
|
0.299
|
— |
-0.396
|
— |
-0.322
|
— | — | — | — | — |
No JSON data available for plots.