SCN Proteipedia

Hg_chrom8_TN10mRNA_15905

Organism: Heterodera glycines Gene Locus: chr8:6374215-6375550 Feature type: polypeptide

Protein Sequence

Length: 351

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.663	1.458	1.243	0.393	1.187	1.169	0.475	1.709	1.013	0.655	1.079	1.006	1.978	1.534	1.105	1.18	0.794	0.691	0.438	1.173	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom8_TN10gene_15034	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	5-pJ2_J3_J4	0.991

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	cytoplasm\|nucleus	—	KRHLACKGQKTRGDRK,RKATESPTTNVIPSKRSRN	—	—	—	—	—	—	0.000	—	—	0.811	0.133	0.006	0.490	0.024	0.007	0.048	0.085	0.007	0.014

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0012147	1.000	1.000	Hsc_gene_6365.t1	Hsc_gene_6365.t1	—	—	KAI3411953.1 H/ACA ribonucleoprotein complex non-core subunit naf1 [Globodera pallida]	No	0.100

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0000493\|GO:0001522\|GO:0003723\|GO:0005732\|GO:0042254	GO:0008150_0.948\|GO:0009987_0.894\|GO:0065007_0.874\|GO:0050789_0.856\|GO:0050794_0.850\|GO:0008152_0.827\|GO:0044238_0.823\|GO:0043170_0.813\|GO:0009058_0.804\|GO:0044237_0.804\|GO:0019222_0.792\|GO:0044249_0.789\|GO:0009059_0.786\|GO:0010467_0.786\|GO:0006139_0.783\|GO:0031323_0.783\|GO:0060255_0.783\|GO:0080090_0.780\|GO:0034654_0.778\|GO:0090304_0.775\|GO:0016070_0.769\|GO:0009889_0.766\|GO:0031326_0.766\|GO:0141187_0.761\|GO:0010468_0.760\|GO:0010556_0.760\|GO:0071840_0.754\|GO:0048519_0.751\|GO:0019219_0.750\|GO:0051252_0.744\|GO:0009892_0.714\|GO:0009056_0.711\|GO:0010605_0.711\|GO:0065008_0.707\|GO:0009057_0.700\|GO:0044085_0.697\|GO:0045934_0.697\|GO:0051253_0.697\|GO:0009894_0.692\|GO:0010608_0.684\|GO:0034655_0.681\|GO:0141188_0.680\|GO:0006401_0.679\|GO:0043487_0.676\|GO:0009895_0.674\|GO:0022613_0.670\|GO:0042254_0.670\|GO:0043489_0.670\|GO:1902369_0.670\|GO:0005575_0.645\|GO:0110165_0.639\|GO:0005622_0.606\|GO:0003674_0.570\|GO:0043226_0.570\|GO:0016020_0.554\|GO:0043229_0.547\|GO:0005488_0.525\|GO:0043227_0.513\|GO:0043231_0.503	IPR007504+105-180+\|IPR009000+102-177+\|IPR038664+74-178+\|IPR040309+13-347+	—	PF04410+105-180+Gar1/Naf1_RNA_binding_region	—	PTHR31633+13-347+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	204-272	2.000	1-203;273-351	—	—

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.744	40426.030	6.637	1.000	29.915	15.100	53.846	46.154	15.954	13.960	49.573

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	magenta	saddlebrown	694.652	510.693	657.927	806.159	875.173	691.375	683.044	474.709	640.500	796.573	729.685

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	0.135	0.522	0.402	—	-0.326	—	-0.646	0.663	—	—	—	—	—

No JSON data available for plots.

Back to Browser