SCN Proteipedia

Hg_chrom8_TN10mRNA_15906

Organism: Heterodera glycines Gene Locus: chr8:6375670-6380094 Feature type: polypeptide

Protein Sequence

Length: 1,085

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.697	0.9	1.424	0.35	1.459	0.851	0.998	1.198	1.106	0.947	0.936	2.169	0.794	0.975	1.26	0.895	0.967	1.117	0.354	0.732	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom8_TN10gene_15035	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	14-Not_Clustered	0.555

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	nucleus	—	KRRP,RKRK,KKKRR	—	—	—	—	—	—	0.000	—	—	0.978	0.092	0.020	0.136	0.056	0.024	0.026	0.002	0.012	0.063

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0012148	1.000	1.000	Hsc_gene_6366.t1	Hsc_gene_6366.t1	—	Q21338.3 Transcription elongation factor SPT5 [Caenorhabditis elegans]	KAF7639746.1 Transcription elongation factor SPT5 [Meloidogyne graminicola]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0005515\|GO:0006354\|GO:0006357\|GO:0032784\|GO:0140673	GO:0005575_0.760\|GO:0110165_0.749\|GO:0005622_0.690\|GO:0003674_0.663\|GO:0043226_0.635\|GO:0008150_0.631\|GO:0005488_0.620\|GO:0043229_0.602\|GO:0009987_0.584\|GO:0016020_0.533	IPR005100+203-287+\|IPR005824+439-466_491-518_494-519_613-647_756-783_760-790_1036-1063+\|IPR006645+201-290+\|IPR008991+483-542+\|IPR014722+434-491_493-543_742-808+\|IPR017071+1-1085+\|IPR022581+100-197+\|IPR024945+819-944+\|IPR036735+183-288+\|IPR039385+203-288+\|IPR039659+37-1066+\|IPR041973+299-336+\|IPR041975+440-490+\|IPR041976+491-541+\|IPR041977+617-666+\|IPR041978+754-805+	SM00738+201-290+\|SM00739+439-466_491-518_613-647_756-783_1036-1063+\|SM01104+819-944+	PF00467+494-519_760-790+KOW_motif\|PF03439+203-287+Early_transcription_elongation_factor_of_RNA_pol_II,_NGN_section\|PF11942+100-197+Spt5_transcription_elongation_factor,_acidic_N-terminal\|PF12815+829-892+Spt5_C-terminal_nonapeptide_repeat_binding_Spt4	G3DSA:2.30.30.30:FF:000013+434-491+Transcription_elongation_factor_SPT5\|G3DSA:2.30.30.30:FF:000016+493-543+Transcription_elongation_factor_SPT5\|G3DSA:3.30.70.940:FF:000005+183-288+Transcription_elongation_factor_SPT5	PTHR11125+37-1066+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-193;681-972	2.000	194-680;973-1085	9eh1_Z	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.549	120557.640	4.903	-33.000	31.336	8.203	50.691	49.309	14.747	16.590	51.705

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	darkgrey	darkturquoise	2449.728	5075.333	2110.214	2313.016	2789.256	2215.988	3212.451	2199.542	2439.404	1419.582	1856.648

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-1.496	-1.271	0.241	0.238	-0.317	0.547	—	0.690	—	—	—	—	—

No JSON data available for plots.

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