Hg_chrom8_TN10mRNA_15907
Organism: Heterodera glycines Gene Locus: chr8:6380790-6385233 Feature type: polypeptideProtein Sequence
Length: 901
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.658 | 0.878 | 0.726 | 0.612 | 1.073 | 0.939 | 0.568 | 1.665 | 1.283 | 1.575 | 0.605 | 1.175 | 2.22 | 0.683 | 1.2 | 1.031 | 1.037 | 1.194 | 1.025 | 0.881 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_15036
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
1-Not_Clustered
|
0.527
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
transmembrane_domain
|
lysosome_vacuole
|
— |
KRHFFERVLWRACRR
|
— | — | — | — | — | — |
0.000
|
— | — |
0.044
|
0.133
|
0.029
|
0.215
|
0.555
|
0.575
|
0.330
|
0.008
|
0.531
|
0.018
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012149
|
1.000
|
1.000
|
Hsc_gene_6368.t1
|
Hsc_gene_6368.t1
|
— |
G5EEK9.1 V-type proton ATPase 116 kDa subunit a 2 [Caenorhabditis elegans]
|
KAH7725553.1 v-type proton ATPase subunit a isoform 4 [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0000220|GO:0033179|GO:0046961|GO:1902600
|
GO:0005575_0.927|GO:0110165_0.927|GO:0016020_0.898|GO:0008150_0.882|GO:0005622_0.811|GO:0009987_0.797|GO:0043226_0.788|GO:0071944_0.779|GO:0005886_0.776|GO:0005737_0.766|GO:0043227_0.757|GO:0043229_0.756|GO:0005773_0.735|GO:0043231_0.735|GO:0051179_0.616|GO:0006810_0.615|GO:0051234_0.615|GO:0012505_0.581|GO:0031090_0.581|GO:0098588_0.541
|
IPR002490+2-893_26-887+|IPR026028+1-897+
|
— |
PF01496+26-887+V-type_ATPase_116kDa_subunit_family
|
— |
PTHR11629+2-893+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-901
|
5i1m_V
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.552
|
103426.400
|
7.113
|
10.000
|
23.640
|
15.649
|
44.617
|
55.383
|
13.208
|
10.433
|
44.950
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
lightyellow
|
turquoise
|
1317.275
|
1004.246
|
1465.795
|
1245.914
|
1942.093
|
2969.753
|
3095.757
|
2392.634
|
71.687
|
415.739
|
268.288
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.317
|
0.174
|
-0.127
|
0.608
|
0.628
|
— |
-0.418
|
0.514
|
— |
4.327
|
— | — | — |
No JSON data available for plots.