Hg_chrom8_TN10mRNA_15908
Organism: Heterodera glycines Gene Locus: chr8:6386742-6387870 Feature type: polypeptideProtein Sequence
Length: 313
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.929 | 1.189 | 0.929 | 0.331 | 1.118 | 0.819 | 1.407 | 0.799 | 1.065 | 0.82 | 1.017 | 0.752 | 0.887 | 1.106 | 1.304 | 0.913 | 0.838 | 0.775 | 0.492 | 1.785 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_15037
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
29-J3_J4_Female_Male
|
0.991
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.577
|
0.082
|
0.024
|
0.584
|
0.137
|
0.105
|
0.139
|
0.011
|
0.050
|
0.121
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012150
|
1.000
|
1.000
|
Hsc_gene_6369.t1
|
Hsc_gene_6369.t1
|
— |
Q9XW17.1 Protein LSM14 homolog car-1 [Caenorhabditis elegans]
|
KAI3411950.1 Protein LSM14 A [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003723
|
GO:0005575_0.866|GO:0110165_0.756|GO:0008150_0.708|GO:0003674_0.706|GO:0005622_0.661|GO:0005488_0.636|GO:0009987_0.633|GO:0065007_0.585|GO:0005737_0.584|GO:0050789_0.569|GO:0008152_0.557|GO:0050794_0.549|GO:0044237_0.545|GO:0009058_0.536|GO:0043170_0.533|GO:0097159_0.533|GO:0009059_0.520|GO:0010467_0.520|GO:0044249_0.520|GO:0003676_0.510|GO:0043226_0.508
|
IPR010920+13-88+|IPR019050+139-235_141-234+|IPR025609+11-112_13-86_14-84+|IPR025761+191-207+|IPR047575+6-88+
|
SM01199+139-235+|SM01271+11-112+
|
PF09532+141-234+FDF_domain|PF12701+13-86+Scd6-like_Sm_domain
|
— |
PTHR13586+137-276+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-6;312-313
|
1.000
|
7-311
|
6f9w_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.918
|
34386.440
|
8.789
|
6.500
|
26.518
|
11.502
|
46.326
|
53.674
|
14.696
|
11.821
|
53.355
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
red
|
658.542
|
233.263
|
354.371
|
499.904
|
1046.043
|
1185.059
|
1709.027
|
677.342
|
42.853
|
709.603
|
423.853
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.371
|
0.962
|
0.607
|
1.034
|
— |
0.540
|
-0.920
|
1.482
|
— | — |
2.518
|
— | — |
No JSON data available for plots.