SCN Proteipedia

Hg_chrom8_TN10mRNA_15909

Organism: Heterodera glycines Gene Locus: chr8:6392922-6402835 Feature type: polypeptide

Protein Sequence

Length: 1,189

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	1.35	0.743	0.933	1.131	1.023	1.251	1.011	1.388	0.43	1.159	0.421	0.594	0.841	1.407	1.476	1.298	0.786	0.828	1.488	0.396	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom8_TN10gene_15038	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	28-Egg	0.999

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	signal_peptide\|transmembrane_domain	cell_membrane	—	RRSGLKVPKKKRKSD,RRSGKFMLTGRPRRA	22-48	0.976	18-54	0.999	—	—	0.000	—	—	0.151	0.057	0.012	0.268	0.177	0.384	0.242	0.092	0.871	0.083

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0001330	2.000	3.000	Hsc_gene_6370.t1;Hsc_gene_6370.t2;Hsc_gene_6370.t3	Hsc_gene_6370.t1;Hsc_gene_6370.t2;Hsc_gene_6370.t3	—	Q26261.3 Netrin receptor unc-5 [Caenorhabditis elegans]	KAI6211914.1 Netrin receptor UNC5 [Aphelenchoides besseyi]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0005042\|GO:0016020\|GO:0038007	GO:0008150_0.964\|GO:0005575_0.830\|GO:0110165_0.823\|GO:0009987_0.818\|GO:0032501_0.698\|GO:0032502_0.676\|GO:0048856_0.674\|GO:0065007_0.658\|GO:0007275_0.654\|GO:0050789_0.640\|GO:0048731_0.638\|GO:0016020_0.609\|GO:0071944_0.608\|GO:0050794_0.597\|GO:0007399_0.585\|GO:0071840_0.565\|GO:0016043_0.564\|GO:0003674_0.560\|GO:0005886_0.552\|GO:0050896_0.548	IPR000884+295-370_372-423+\|IPR000906+780-886_786-881+\|IPR003598+214-281+\|IPR003599+208-293+\|IPR007110+205-285+\|IPR013783+29-132_199-295+\|IPR036179+204-294+\|IPR036383+296-369_371-423_372-420+\|IPR037936+256-1013+	SM00218+780-886+\|SM00408+214-281+\|SM00409+208-293+	PF00791+786-881+ZU5_domain\|PF13927+212-278+Immunoglobulin_domain	G3DSA:2.60.40.10:FF:000032+200-296+palladin_isoform_X1	PTHR12582+256-1013+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-27;119-193;584-796;1189-1189	3.000	28-118;194-583;797-1188	6ool_A	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.797	127983.950	6.569	1.500	24.054	9.083	46.005	53.995	12.784	11.270	58.368

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	black	brown	632.859	2285.459	1039.513	805.931	651.970	790.835	553.062	567.139	166.385	133.753	147.738

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-1.364	-1.641	-0.260	-0.337	0.293	-0.506	-0.584	—	—	—	—	—	—

No JSON data available for plots.

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