Hg_chrom8_TN10mRNA_15912
Organism: Heterodera glycines Gene Locus: chr8:6413306-6416288 Feature type: polypeptideProtein Sequence
Length: 541
(Signal peptide: 1-17)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.688 | 1.161 | 0.84 | 0.255 | 0.863 | 1.327 | 0.726 | 1.201 | 1.643 | 1.649 | 0.56 | 1.848 | 1.54 | 1.28 | 1.66 | 0.819 | 0.818 | 0.728 | 0.142 | 0.707 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_15041
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
8-Not_Clustered
|
0.930
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
— |
extracellular
|
mitochondria
|
— |
42-68
|
0.905
|
— | — |
1-17
|
0.994
|
1.000
|
0.000
|
0.000
|
0.245
|
0.460
|
0.153
|
0.236
|
0.095
|
0.166
|
0.054
|
0.048
|
0.350
|
0.898
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012153
|
1.000
|
1.000
|
Hsc_gene_6374.t1
|
Hsc_gene_6374.t1
|
— | — |
KAI1725131.1 lipopolysaccharide-binding protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0008289
|
GO:0008150_0.766|GO:0005575_0.751|GO:0110165_0.749|GO:0003674_0.685|GO:0005488_0.593|GO:0005622_0.574|GO:0009987_0.527|GO:0005737_0.519
|
IPR001124+275-520_300-517+|IPR017942+39-285_64-214+|IPR017943+33-269_271-521+|IPR032942+3-534+
|
SM00328+39-285+|SM00329+300-517+
|
PF01273+64-214+LBP_/_BPI_/_CETP_family,_N-terminal_domain|PF02886+275-520+LBP_/_BPI_/_CETP_family,_C-terminal_domain
|
— |
PTHR10504+3-534+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-541
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.839
|
61418.160
|
9.796
|
17.500
|
24.030
|
10.536
|
44.917
|
55.083
|
14.233
|
9.797
|
44.547
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
purple
|
magenta
|
150.549
|
251.055
|
35.775
|
33.102
|
244.269
|
579.541
|
127.383
|
391.064
|
1.719
|
34.044
|
20.190
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-3.040
|
-3.060
|
— |
2.851
|
1.262
|
-2.176
|
— |
-1.471
|
— |
4.445
|
— | — | — |