Hg_chrom8_TN10mRNA_15914
Organism: Heterodera glycines Gene Locus: chr8:6422115-6425796 Feature type: polypeptideProtein Sequence
Length: 739
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.771 | 1.227 | 1.206 | 0.933 | 1.488 | 1.145 | 0.419 | 1.286 | 1.323 | 1.17 | 1.251 | 1.194 | 1.353 | 0.442 | 1.243 | 0.812 | 0.776 | 0.923 | 0.937 | 0.995 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_15043
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
14-Not_described
|
0.979
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
mitochondrial_transit_peptide
|
mitochondrion
|
— |
KRAR,KKASIEPDTDKRKLF,KEQRKIQLQKEKEMKRQAKEEQKRKT
|
— | — |
19-51
|
0.997
|
— | — |
0.000
|
— | — |
0.127
|
0.849
|
0.046
|
0.392
|
0.125
|
0.097
|
0.174
|
0.231
|
0.103
|
0.115
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012155
|
1.000
|
1.000
|
Hsc_gene_6376.t1
|
Hsc_gene_6376.t1
|
— |
Q5M7N8.1 Cysteine--tRNA ligase, cytoplasmic [Xenopus tropicalis]
|
KAI1715685.1 tRNA synthetases class I (C) catalytic domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0000166|GO:0004812|GO:0004817|GO:0005524|GO:0006418|GO:0006423
|
GO:0005575_0.927|GO:0110165_0.925|GO:0005622_0.860|GO:0005737_0.743|GO:0008150_0.650|GO:0009987_0.617|GO:0016020_0.568|GO:0043226_0.559|GO:0003674_0.534|GO:0043229_0.532
|
IPR009080+527-681+|IPR014729+39-482+|IPR015803+57-679_57-683+|IPR024909+51-693_80-91_117-126_367-385_398-419+|IPR032678+58-482_70-489+
|
— |
PF01406+70-489+tRNA_synthetases_class_I_(C)_catalytic_domain
|
— |
PTHR10890+51-693+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
695-739
|
1.000
|
1-694
|
1u0b_B
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.590
|
85889.760
|
6.547
|
0.500
|
32.476
|
12.043
|
52.639
|
47.361
|
16.915
|
15.562
|
43.572
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
paleturquoise
|
2282.814
|
2662.021
|
2166.140
|
2026.521
|
2173.758
|
2335.992
|
2406.207
|
2025.235
|
2963.073
|
1841.555
|
2322.206
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.527
|
-0.531
|
— | — | — | — |
-0.309
|
0.391
|
— | — | — | — | — |
No JSON data available for plots.