Hg_chrom8_TN10mRNA_15916
Organism: Heterodera glycines Gene Locus: chr8:6432075-6433973 Feature type: polypeptideProtein Sequence
Length: 444
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.943 | 1.048 | 1.31 | 0.854 | 1.539 | 0.635 | 0.831 | 1.689 | 1.451 | 0.913 | 1.263 | 1.192 | 0.813 | 0.736 | 1.149 | 0.708 | 1.108 | 0.546 | 0.693 | 0.994 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_15045
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
24-J3_Female
|
0.993
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm
|
— |
KKAAKKRGKG,RRAAESHRQTRKYVK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.371
|
0.184
|
0.017
|
0.675
|
0.152
|
0.083
|
0.248
|
0.004
|
0.104
|
0.043
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012157
|
1.000
|
1.000
|
Hsc_gene_6378.t1
|
Hsc_gene_6378.t1
|
— |
H1UBK1.1 Methionine aminopeptidase 2 [Caenorhabditis elegans]
|
KAI1725137.1 metallopeptidase family m24 domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0006508|GO:0070006
|
GO:0005575_0.779|GO:0110165_0.777|GO:0008150_0.764|GO:0005622_0.712|GO:0005737_0.654|GO:0009987_0.610|GO:0003674_0.540
|
IPR000994+133-329+|IPR001714+185-198_210-226_286-298_317-329+|IPR002468+9-444_130-439_130-440+|IPR018349+210-226+|IPR036005+34-444_80-443+|IPR036388+337-415+|IPR036390+339-414+|IPR050247+27-444+
|
— |
PF00557+133-329+Metallopeptidase_family_M24
|
— |
PTHR45777+27-444+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-134
|
1.000
|
135-444
|
9fpz_A
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.547
|
50001.220
|
6.129
|
-3.500
|
33.784
|
10.586
|
52.477
|
47.523
|
17.342
|
16.441
|
48.423
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
lightgreen
|
3076.543
|
2312.831
|
2513.549
|
3310.066
|
3620.483
|
3410.727
|
3990.016
|
2816.381
|
2085.209
|
3655.698
|
2982.632
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.110
|
0.380
|
0.506
|
0.097
|
— |
0.238
|
-0.383
|
0.647
|
— | — | — | — | — |
No JSON data available for plots.