SCN Proteipedia

Hg_chrom8_TN10mRNA_15917

Organism: Heterodera glycines Gene Locus: chr8:6433983-6437588 Feature type: polypeptide

Protein Sequence

Length: 903

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.798	1.03	0.805	0.535	1.237	1.363	0.541	0.831	1.034	0.838	1.208	0.977	1.507	1.959	0.814	1.392	0.908	0.856	0.767	0.521	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom8_TN10gene_15046	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	29-J3_J4_Female_Male	0.997

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	cytoplasm	—	PKANKRKRGKKEEP,KKPFKRAPPHKKKEQ,KKLFNNRFIRAKRKEA,KRSDLLQQIQQGTKLKKV	—	—	—	—	—	—	0.000	—	—	0.370	0.141	0.009	0.791	0.106	0.130	0.193	0.026	0.179	0.081

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0012158	1.000	1.000	Hsc_gene_6379.t1	—	—	Q9Z0R0.3 Serine/threonine-protein kinase haspin [Mus musculus]	KAI1727573.1 haspin like kinase domain-containing protein [Ditylenchus destructor]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0003779\|GO:0004672\|GO:0005524\|GO:0006468	GO:0008150_0.966\|GO:0005575_0.946\|GO:0110165_0.944\|GO:0009987_0.932\|GO:0005622_0.900\|GO:0003674_0.884\|GO:0043226_0.835\|GO:0043229_0.822\|GO:0016043_0.814\|GO:0071840_0.814\|GO:0016020_0.777\|GO:0006996_0.728\|GO:0007049_0.689\|GO:0022402_0.689\|GO:0003824_0.688\|GO:0065007_0.688\|GO:0140096_0.688\|GO:0043227_0.681\|GO:0016740_0.677\|GO:0050789_0.673\|GO:0043231_0.669\|GO:0050794_0.665\|GO:0016772_0.661\|GO:0016301_0.659\|GO:0016773_0.658\|GO:0004672_0.657\|GO:0006325_0.644\|GO:0006338_0.644\|GO:0004674_0.615\|GO:0140993_0.614\|GO:0035173_0.608\|GO:0005634_0.593\|GO:0000280_0.558\|GO:0048285_0.558\|GO:0000278_0.551\|GO:0005488_0.551\|GO:0140014_0.551\|GO:1903047_0.551\|GO:0008152_0.536\|GO:0043170_0.536\|GO:0044238_0.535\|GO:0051276_0.519	IPR000719+574-903+\|IPR003124+410-427_411-427_443-464_444-461+\|IPR011009+562-792+\|IPR017441+580-601+\|IPR024604+807-895+	SM00246+410-427_444-461+\|SM01331+807-895+	PF02205+411-427_443-464+WH2_motif\|PF12330+531-873+Haspin_like_kinase_domain	—	PTHR24419+273-871+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-475	1.000	476-903	—	—

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.876	100349.620	7.587	8.500	25.471	9.856	50.498	49.502	13.621	11.849	52.935

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	grey60	saddlebrown	1282.460	943.419	908.240	990.814	1452.469	1245.670	1407.162	1376.750	763.041	1916.784	1422.323

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.285	—	0.234	0.520	-0.207	0.186	—	—	—	—	—	—	—

No JSON data available for plots.

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