SCN Proteipedia

Hg_chrom8_TN10mRNA_15925

Organism: Heterodera glycines Gene Locus: chr8:6458153-6464906 Feature type: polypeptide

Protein Sequence

Length: 793

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.821	0.762	0.986	0.522	1.366	1.52	0.871	0.946	1.317	1.346	1.032	1.484	1.156	0.703	1.518	0.829	0.786	0.783	0.679	0.668	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom8_TN10gene_15052	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	10-Not_Clustered	0.752

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_export_signal	cytoplasm	—	KRRS,RRIGKTATALVKKLCR	—	—	—	—	—	—	0.000	—	—	0.336	0.174	0.028	0.664	0.229	0.416	0.209	0.025	0.403	0.049

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0004791	2.000	1.000	Hsc_gene_6384.t1	Hsc_gene_6384.t1	—	O76360.2 cGMP-dependent protein kinase egl-4 [Caenorhabditis elegans]	KAI3411938.1 cGMP-dependent protein kinase egl-4 [Globodera pallida]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0004672\|GO:0004674\|GO:0004692\|GO:0005524\|GO:0006468	GO:0008150_0.921\|GO:0005575_0.875\|GO:0110165_0.868\|GO:0003674_0.855\|GO:0009987_0.835\|GO:0003824_0.816\|GO:0016740_0.816\|GO:0005622_0.805\|GO:0140096_0.804\|GO:0016772_0.802\|GO:0016301_0.778\|GO:0016773_0.776\|GO:0004672_0.767\|GO:0065007_0.757\|GO:0050789_0.748\|GO:0005488_0.742\|GO:0004674_0.703\|GO:0005737_0.684\|GO:0050794_0.669\|GO:0016020_0.645\|GO:0050896_0.626\|GO:0008152_0.617\|GO:0044237_0.617\|GO:0043170_0.616\|GO:0032501_0.610\|GO:0036094_0.602\|GO:0043167_0.602\|GO:0032502_0.597\|GO:0000166_0.582\|GO:0043168_0.582\|GO:0097159_0.582\|GO:1901265_0.582\|GO:1901363_0.582\|GO:0048856_0.576\|GO:0017076_0.569\|GO:0032553_0.564\|GO:0032555_0.564\|GO:0097367_0.564\|GO:0051716_0.557\|GO:0019538_0.533\|GO:0044238_0.533\|GO:0004690_0.527\|GO:0030551_0.527\|GO:0071840_0.514\|GO:0016043_0.509\|GO:0071944_0.509	IPR000595+196-309_196-310_196-311_216-293_314-420_314-428_314-437_334-419+\|IPR000719+473-748_475-748+\|IPR000961+749-793+\|IPR002374+24-793_320-334_355-364_391-400_405-414_415-429+\|IPR008271+608-620+\|IPR011009+457-787+\|IPR014710+168-301_302-445+\|IPR017441+479-503+\|IPR018488+223-239_259-276_341-357_383-400+\|IPR018490+169-294_304-421+\|IPR035014+479-755+	SM00100+196-309_314-437+\|SM00133+749-793+\|SM00220+473-748+	PF00027+216-293_334-419+Cyclic_nucleotide-binding_domain\|PF00069+475-748+Protein_kinase_domain	G3DSA:1.10.510.10:FF:000096+573-768+cGMP-dependent_protein_kinase\|G3DSA:2.60.120.10:FF:000064+301-438+cGMP-dependent_protein_kinase,_isozyme\|G3DSA:2.60.120.10:FF:000072+169-300+cGMP-dependent_protein_kinase	PTHR24353+125-788+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-184;768-793	1.000	185-767	7t4w_B	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.664	89776.680	8.212	12.500	29.760	9.206	49.559	50.441	16.141	13.619	44.010

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	black	paleturquoise	4599.705	9338.073	11256.650	4004.233	2927.200	4027.741	3974.959	8642.800	4171.550	430.676	2033.908

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	—	-1.359	-1.384	-0.483	0.475	—	1.000	-0.978	3.157	—	—	—	—

No JSON data available for plots.

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