Hg_chrom8_TN10mRNA_15926
Organism: Heterodera glycines Gene Locus: chr8:6465113-6468345 Feature type: polypeptideProtein Sequence
Length: 364
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.118 | 0.831 | 0.999 | 0.568 | 1.236 | 0.986 | 0.556 | 1.648 | 0.855 | 1.634 | 0.541 | 1.131 | 1.068 | 1.057 | 1.065 | 1.766 | 0.766 | 0.791 | 0.423 | 0.485 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_15053
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
4-Egg_Male
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal|nuclear_export_signal
|
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.445
|
0.210
|
0.009
|
0.656
|
0.128
|
0.308
|
0.237
|
0.030
|
0.239
|
0.071
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012162
|
1.000
|
1.000
|
Hsc_gene_6385.t1
|
Hsc_gene_6385.t1
|
— | — |
KAI3411936.1 Cerebral cavernous malformations protein 2 [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.948|GO:0009987_0.896|GO:0032501_0.790|GO:0032502_0.785|GO:0048856_0.785|GO:0007275_0.763|GO:0048731_0.746|GO:0048869_0.735|GO:0030154_0.734|GO:0005575_0.729|GO:0009653_0.704|GO:0009888_0.699|GO:0035295_0.681|GO:0072359_0.680|GO:0035239_0.678|GO:0001568_0.674|GO:0001944_0.674|GO:0048514_0.673|GO:0001570_0.670|GO:0071840_0.574|GO:0016043_0.567|GO:0110165_0.530|GO:0048513_0.515
|
IPR011993+6-151+|IPR026159+19-312+|IPR032375+219-310+
|
— |
PF16545+219-310+Cerebral_cavernous_malformation_protein,_harmonin-homology
|
— |
PTHR21642+19-312+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-2;335-364
|
1.000
|
3-334
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.550
|
39795.780
|
5.124
|
-9.000
|
25.000
|
9.341
|
49.451
|
50.549
|
12.088
|
12.912
|
52.747
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
1314.880
|
1989.462
|
1581.591
|
763.830
|
768.006
|
1560.765
|
1443.389
|
2069.402
|
1059.363
|
1141.910
|
1106.533
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.562
|
-1.518
|
-0.940
|
— |
1.037
|
— |
0.305
|
-0.378
|
— | — | — | — | — |
No JSON data available for plots.