Hg_chrom8_TN10mRNA_15928
Organism: Heterodera glycines Gene Locus: chr8:6472876-6473736 Feature type: polypeptideProtein Sequence
Length: 179
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.52 | 1.559 | 1.117 | 1.348 | 0.931 | 0.573 | 0.665 | 1.397 | 1.241 | 1.208 | 1.354 | 0.986 | 1.552 | 0.43 | 1.026 | 0.638 | 0.641 | 1.608 | 0.0 | 1.643 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_15055
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
20-Not_Clustered
|
0.756
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_export_signal
|
cytoplasm|nucleus
|
— |
LGEV
|
— | — | — | — | — | — |
0.000
|
— | — |
0.698
|
0.234
|
0.013
|
0.632
|
0.095
|
0.166
|
0.119
|
0.143
|
0.084
|
0.051
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012164
|
1.000
|
1.000
|
Hsc_gene_6387.t1
|
Hsc_gene_6387.t1
|
— |
Q0IIJ0.1 N-alpha-acetyltransferase 50 [Bos taurus]
|
KAI3411934.1 N-alpha-acetyltransferase 50 [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016747
|
GO:0008150_0.874|GO:0009987_0.806|GO:0005575_0.799|GO:0110165_0.788|GO:0008152_0.762|GO:0044238_0.736|GO:0044237_0.732|GO:0005622_0.730|GO:0009058_0.714|GO:0043170_0.692|GO:0044249_0.692|GO:0009059_0.672|GO:0003674_0.667|GO:0010467_0.660|GO:0005737_0.631|GO:0003824_0.593|GO:0019538_0.556|GO:0051604_0.513|GO:0016740_0.510
|
IPR000182+29-178_51-152+|IPR016181+29-177+|IPR051556+27-175+
|
— |
PF00583+51-152+Acetyltransferase_(GNAT)_family
|
G3DSA:3.40.630.30:FF:000006+26-178+Putative_n-alpha-acetyltransferase_50
|
PTHR42919+27-175+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-179
|
6wfo_C
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.729
|
20575.810
|
8.363
|
6.500
|
28.492
|
13.966
|
45.810
|
54.190
|
16.760
|
11.732
|
48.045
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey60
|
2177.948
|
1574.609
|
1471.719
|
1158.837
|
1265.788
|
1245.781
|
936.500
|
1394.620
|
2313.122
|
4400.736
|
3506.044
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.327
|
-0.579
|
-0.236
|
0.095
|
— |
-0.401
|
— |
-0.431
|
— | — | — | — | — |
No JSON data available for plots.