Hg_chrom8_TN10mRNA_15929
Organism: Heterodera glycines Gene Locus: chr8:6474552-6477283 Feature type: polypeptideProtein Sequence
Length: 388
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.599 | 1.139 | 0.984 | 0.355 | 1.46 | 1.388 | 0.522 | 2.062 | 1.432 | 1.254 | 1.132 | 1.364 | 1.145 | 0.743 | 1.157 | 1.178 | 0.507 | 0.781 | 1.784 | 0.834 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_15056
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
9-Not_Clustered
|
0.896
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
mitochondrial_transit_peptide
|
mitochondrion
|
— |
RKSK
|
— | — |
1-51
|
0.999
|
— | — |
0.000
|
— | — |
0.176
|
0.971
|
0.028
|
0.149
|
0.085
|
0.026
|
0.048
|
0.019
|
0.029
|
0.029
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012165
|
1.000
|
1.000
|
Hsc_gene_6388.t1
|
Hsc_gene_6388.t1
|
— |
Q9U6M0.2 Evolutionarily conserved signaling intermediate in Toll pathway, mitochondrial [Drosophila melanogaster]
|
KAH7729469.1 Protein Y17G9B.5 [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.944|GO:0005575_0.893|GO:0005622_0.887|GO:0110165_0.887|GO:0043226_0.828|GO:0016020_0.818|GO:0043229_0.815|GO:0005737_0.794|GO:0050896_0.780|GO:0043227_0.777|GO:0043231_0.749|GO:0009987_0.643|GO:0003674_0.610|GO:0065007_0.589|GO:0050789_0.576|GO:0005739_0.566|GO:0050794_0.566|GO:0005488_0.564|GO:0006950_0.523
|
IPR010418+22-382+|IPR029342+238-362_238-363+|IPR046448+43-220+
|
SM01284+238-363+
|
PF06239+43-220+Evolutionarily_conserved_signalling_intermediate_in_Toll_pathway|PF14784+238-362+C-terminal_domain_of_the_ECSIT_protein
|
— |
PTHR13113+22-382+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
369-388
|
1.000
|
1-368
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.597
|
45183.270
|
6.939
|
4.000
|
31.443
|
13.402
|
53.093
|
46.907
|
17.268
|
14.175
|
41.237
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
blue
|
1039.806
|
668.643
|
1340.083
|
793.379
|
1024.331
|
788.392
|
877.823
|
1190.584
|
584.476
|
1604.579
|
1167.392
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.774
|
— |
-0.648
|
0.337
|
-0.363
|
— |
0.492
|
-0.297
|
— | — | — | — | — |
No JSON data available for plots.