SCN Proteipedia

Hg_chrom8_TN10mRNA_15931

Organism: Heterodera glycines Gene Locus: chr8:6478610-6480146 Feature type: polypeptide

Protein Sequence

Length: 323

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.9	0.432	1.295	0.427	0.929	2.143	0.59	1.858	1.032	1.297	0.891	1.457	0.602	1.608	1.137	1.061	0.558	1.032	0.238	0.82	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom8_TN10gene_15058	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	19-Eggs_Female	0.988

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	nucleus	—	RKRK	—	—	—	—	—	—	0.000	—	—	0.969	0.053	0.011	0.200	0.021	0.060	0.033	0.001	0.107	0.032

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0012167	1.000	1.000	Hsc_gene_6390.t1	—	—	P0C606.1 SAGA-associated factor 29 [Rattus norvegicus]	KAF7634846.1 Thioredoxin domain-containing protein [Meloidogyne graminicola]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0000124	GO:0008150_0.943\|GO:0005575_0.907\|GO:0110165_0.901\|GO:0009987_0.892\|GO:0003674_0.863\|GO:0065007_0.850\|GO:0005622_0.849\|GO:0050789_0.839\|GO:0005488_0.825\|GO:0050794_0.822\|GO:0043226_0.807\|GO:0050896_0.799\|GO:0008152_0.792\|GO:0005515_0.788\|GO:0043229_0.782\|GO:0044238_0.777\|GO:0043170_0.768\|GO:0051716_0.766\|GO:0019222_0.750\|GO:0006139_0.737\|GO:0060255_0.737\|GO:0080090_0.733\|GO:0090304_0.721\|GO:0006950_0.719\|GO:0019219_0.706\|GO:0033554_0.695\|GO:0007049_0.683\|GO:0051301_0.681\|GO:0051726_0.681\|GO:0051302_0.670\|GO:0032991_0.651\|GO:0140030_0.650\|GO:0140034_0.650\|GO:0043228_0.642\|GO:0043232_0.642\|GO:1902494_0.566\|GO:0016020_0.562\|GO:0005694_0.557\|GO:0140535_0.555\|GO:0000785_0.553\|GO:1990234_0.551\|GO:0000123_0.540\|GO:0031248_0.540\|GO:0070461_0.540\|GO:0140672_0.540\|GO:1902493_0.540	IPR010750+168-304_183-297+\|IPR037802+27-297+\|IPR047287+239-296+	—	PF07039+183-297+SGF29_tudor-like_domain	—	PTHR21539+27-297+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-77;296-323	1.000	78-295	5c0m_B	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.627	36073.020	6.774	2.000	27.864	8.978	48.916	51.084	15.170	12.693	48.916

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	darkgrey	saddlebrown	949.455	1392.999	734.643	768.816	884.465	902.153	1190.553	1179.397	1012.501	749.606	862.275

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-1.154	-0.995	0.175	0.170	—	0.411	0.282	—	—	—	—	—	—

No JSON data available for plots.

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