Hg_chrom8_TN10mRNA_15932
Organism: Heterodera glycines Gene Locus: chr8:6480200-6484236 Feature type: polypeptideProtein Sequence
Length: 440
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.978 | 1.057 | 1.24 | 0.47 | 1.326 | 1.049 | 0.433 | 1.25 | 0.909 | 1.259 | 1.24 | 1.738 | 2.02 | 0.874 | 0.788 | 0.714 | 0.745 | 1.033 | 1.224 | 0.735 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_15059
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
20-Egg_ppJ2_pJ2_J3_J4
|
0.998
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide
|
endoplasmic_reticulum
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.231
|
0.180
|
0.105
|
0.311
|
0.932
|
0.134
|
0.249
|
0.039
|
0.376
|
0.261
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012168
|
1.000
|
1.000
|
Hsc_gene_6391.t1
|
Hsc_gene_6391.t1
|
— |
Q17688.2 Endoplasmic reticulum resident protein 44.2 [Caenorhabditis elegans]
|
AVA09655.1 putative effector protein [Heterodera avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.891|GO:0110165_0.887|GO:0008150_0.749|GO:0005622_0.744|GO:0016020_0.727|GO:0005737_0.692|GO:0071944_0.687|GO:0009987_0.669|GO:0043226_0.661|GO:0005886_0.660|GO:0043229_0.644|GO:0043227_0.611|GO:0043231_0.597|GO:0003674_0.539|GO:0005773_0.522|GO:0012505_0.510
|
IPR013766+13-152_47-149+|IPR036249+42-152_168-252_249-370+|IPR052643+39-440+
|
— |
PF00085+47-149+Thioredoxin|PF13848+185-359+Thioredoxin-like_domain
|
— |
PTHR46295+39-440+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
383-440
|
1.000
|
1-382
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.660
|
50561.850
|
5.511
|
-6.500
|
29.318
|
13.864
|
47.500
|
52.500
|
14.545
|
14.773
|
45.682
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
yellow
|
3332.462
|
3209.658
|
3091.163
|
2625.083
|
3353.814
|
3018.447
|
2209.046
|
2421.744
|
6239.736
|
2426.362
|
4060.665
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.283
|
-0.427
|
-0.128
|
0.321
|
-0.137
|
-0.441
|
-0.421
|
— | — | — | — | — | — |
No JSON data available for plots.