Hg_chrom8_TN10mRNA_15935
Organism: Heterodera glycines Gene Locus: chr8:6488769-6490568 Feature type: polypeptideProtein Sequence
Length: 277
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.462 | 1.427 | 0.788 | 0.124 | 1.925 | 0.833 | 0.946 | 0.903 | 1.364 | 1.024 | 1.203 | 1.274 | 1.404 | 0.625 | 1.547 | 1.238 | 0.651 | 0.985 | 0.0 | 0.531 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_15062
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.533
|
0.346
|
0.023
|
0.561
|
0.225
|
0.117
|
0.124
|
0.019
|
0.088
|
0.098
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012170
|
1.000
|
1.000
|
Hsc_gene_6393.t1
|
Hsc_gene_6393.t1
|
— |
Q6PHK6.3 Transcriptional activator protein Pur-beta [Danio rerio]
|
KAI1715717.1 purA ssDNA and RNA-binding protein domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0000977|GO:0032422
|
GO:0005575_0.856|GO:0110165_0.856|GO:0005622_0.755|GO:0043226_0.748|GO:0003674_0.741|GO:0016020_0.702|GO:0043229_0.702|GO:0005488_0.691|GO:0043227_0.665|GO:0043231_0.642|GO:0008150_0.633|GO:0097159_0.614|GO:0003676_0.598|GO:0009987_0.579|GO:0003723_0.513|GO:0065007_0.506|GO:0005634_0.505|GO:0050789_0.503
|
IPR006628+4-243_26-235_27-85_102-165_175-238+
|
SM00712+27-85_102-165_175-238+
|
PF04845+26-235+PurA_ssDNA_and_RNA-binding_protein
|
G3DSA:3.30.2450.30:FF:000003+20-166+Histone_acetyltransferase
|
PTHR12611+4-243+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-28;249-277
|
1.000
|
29-248
|
3k44_D
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.787
|
31373.370
|
6.990
|
1.500
|
33.213
|
8.664
|
55.235
|
44.765
|
17.329
|
15.884
|
45.126
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — |
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — | — | — | — | — | — |
No JSON data available for plots.