Hg_chrom8_TN10mRNA_15936
Organism: Heterodera glycines Gene Locus: chr8:6490665-6492883 Feature type: polypeptideProtein Sequence
Length: 518
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.404 | 0.898 | 0.878 | 1.065 | 1.384 | 1.04 | 0.598 | 1.062 | 1.287 | 1.2 | 0.965 | 1.476 | 0.858 | 0.928 | 1.3 | 1.489 | 0.823 | 0.79 | 0.743 | 1.703 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_15063
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
25-Not_Clustered
|
0.818
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
RKRKH,KKWTVEALYESCRMKVR,RKDSISFYEIDGRKNKI
|
— | — |
19-59
|
0.891
|
— | — |
0.000
|
— | — |
0.897
|
0.069
|
0.034
|
0.364
|
0.041
|
0.064
|
0.068
|
0.007
|
0.052
|
0.017
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012171
|
1.000
|
1.000
|
Hsc_gene_6394.t1
|
Hsc_gene_6394.t1
|
— |
Q9TYU5.1 Histone acetyltransferase Tip60 homolog [Caenorhabditis elegans]
|
KAI3411928.1 3-ketoacyl-CoA thiolase 5, peroxisomal [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004402|GO:0006355
|
GO:0008150_0.957|GO:0009987_0.907|GO:0065007_0.817|GO:0050789_0.810|GO:0005575_0.801|GO:0110165_0.796|GO:0003674_0.785|GO:0008152_0.760|GO:0005622_0.757|GO:0043170_0.728|GO:0050794_0.728|GO:0043226_0.699|GO:0043229_0.685|GO:0009058_0.678|GO:0019222_0.667|GO:0044237_0.660|GO:0071840_0.654|GO:0016043_0.652|GO:0016020_0.643|GO:0044249_0.637|GO:0009059_0.634|GO:0009889_0.633|GO:0031323_0.630|GO:0010467_0.627|GO:0060255_0.622|GO:0031326_0.607|GO:0003824_0.605|GO:0010556_0.599|GO:0010468_0.598|GO:0043227_0.589|GO:0140096_0.584|GO:0043231_0.577|GO:0016740_0.576|GO:0044238_0.568|GO:0006325_0.559|GO:0006338_0.559|GO:0016746_0.545|GO:0004402_0.530|GO:0008080_0.530|GO:0016407_0.530|GO:0016410_0.530|GO:0016747_0.530|GO:0034212_0.530|GO:0061733_0.530|GO:0140993_0.530|GO:0005634_0.523|GO:0050896_0.520|GO:0006139_0.517|GO:0090304_0.510
|
IPR000953+58-112+|IPR002717+216-508_277-473+|IPR016181+217-508+|IPR016197+38-113+|IPR025995+45-99+|IPR036388+395-496+|IPR040706+218-272+|IPR050603+47-514+
|
SM00298+58-112+
|
PF01853+277-473+MOZ/SAS_family|PF11717+45-99+RNA_binding_activity-knot_of_a_chromodomain|PF17772+218-272+MYST_family_zinc_finger_domain
|
G3DSA:3.30.60.60:FF:000001+215-272+Histone_acetyltransferase|G3DSA:3.40.630.30:FF:000002+275-404+Histone_acetyltransferase
|
PTHR10615+47-514+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-518
|
2ou2_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.733
|
59647.730
|
6.993
|
3.500
|
27.992
|
11.969
|
51.351
|
48.649
|
14.865
|
13.127
|
45.753
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
greenyellow
|
1255.968
|
1413.289
|
1190.416
|
965.846
|
946.715
|
934.622
|
1375.187
|
1292.199
|
1056.167
|
1658.382
|
1400.290
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.478
|
-0.686
|
-0.192
|
— | — |
0.568
|
0.363
|
0.232
|
— | — | — | — | — |
No JSON data available for plots.