Hg_chrom8_TN10mRNA_15937
Organism: Heterodera glycines Gene Locus: chr8:6493491-6496060 Feature type: polypeptideProtein Sequence
Length: 556
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.962 | 0.711 | 0.654 | 0.806 | 0.839 | 0.784 | 0.921 | 0.45 | 1.878 | 1.191 | 0.709 | 2.222 | 2.098 | 0.657 | 0.991 | 0.848 | 1.002 | 1.036 | 1.522 | 1.058 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_15064
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
1-J4_Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
transmembrane_domain
|
cell_membrane
|
— |
KRADECTAQKRTTRK,RKHNYTDLLRTPKIRRI,KRYVEADQILRNAARINKR
|
— | — | — | — | — | — |
0.000
|
— | — |
0.058
|
0.177
|
0.011
|
0.111
|
0.204
|
0.408
|
0.277
|
0.102
|
0.764
|
0.063
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012172
|
1.000
|
1.000
|
Hsc_gene_6395.t1
|
Hsc_gene_6395.t1
|
— |
Q9VCA2.1 Organic cation transporter protein [Drosophila melanogaster]
|
KAF7639906.1 MFS domain-containing protein [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016020|GO:0022857|GO:0055085
|
GO:0008150_0.958|GO:0009987_0.913|GO:0003674_0.814|GO:0006810_0.802|GO:0051179_0.802|GO:0051234_0.802|GO:0055085_0.789|GO:0005575_0.775|GO:0110165_0.774|GO:0005215_0.748|GO:0022857_0.748|GO:0016020_0.743|GO:0071944_0.717|GO:0005886_0.704|GO:0071705_0.503
|
IPR005828+126-520+|IPR020846+20-514+|IPR036259+99-527_128-516+
|
— |
PF00083+126-520+Sugar_(and_other)_transporter
|
— |
PTHR24064+11-524+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
554-556
|
1.000
|
1-553
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.684
|
62387.000
|
8.150
|
7.500
|
19.065
|
14.029
|
37.230
|
62.770
|
10.432
|
8.633
|
47.302
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
orange
|
brown
|
2040.923
|
2142.157
|
2498.477
|
2131.521
|
2933.521
|
5133.110
|
3784.717
|
3368.102
|
843.018
|
49.922
|
389.820
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
-0.144
|
-0.121
|
0.428
|
0.823
|
-0.432
|
-0.713
|
0.309
|
4.022
|
— |
6.249
|
— | — |
No JSON data available for plots.