SCN Proteipedia

Hg_chrom8_TN10mRNA_15939

Organism: Heterodera glycines Gene Locus: chr8:6499951-6501723 Feature type: polypeptide

Protein Sequence

Length: 360

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.711	1.034	0.707	2.107	1.157	0.997	1.091	1.25	0.432	1.314	0.631	1.144	1.08	1.015	1.474	1.151	0.501	1.136	0.855	0.899	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom8_TN10gene_15066	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	10-Pre_planta	1.000

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	nucleus	—	—	—	—	41-73	0.859	—	—	0.000	—	—	0.738	0.098	0.017	0.410	0.053	0.043	0.043	0.007	0.064	0.056

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0004792	2.000	1.000	Hsc_gene_6397.t1	Hsc_gene_6397.t1	—	Q21006.3 Nuclear hormone receptor family member nhr-34 [Caenorhabditis elegans]	KAI6224940.1 Zinc finger and Nuclear hormone receptor domain containing protein [Aphelenchoides besseyi]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	Yes	GO:0003700\|GO:0006355\|GO:0008270\|GO:0043565	GO:0008150_0.932\|GO:0065007_0.861\|GO:0009987_0.855\|GO:0050789_0.854\|GO:0050794_0.847\|GO:0003674_0.778\|GO:0005575_0.778\|GO:0110165_0.771\|GO:0008152_0.748\|GO:0043170_0.748\|GO:0005488_0.738\|GO:0019222_0.735\|GO:0031323_0.735\|GO:0044237_0.735\|GO:0009058_0.732\|GO:0009059_0.727\|GO:0044249_0.727\|GO:0060255_0.726\|GO:0010467_0.719\|GO:0009889_0.713\|GO:0010556_0.713\|GO:0031326_0.713\|GO:0044238_0.704\|GO:0010468_0.693\|GO:0005622_0.689\|GO:0080090_0.688\|GO:0006139_0.665\|GO:0034654_0.665\|GO:0090304_0.665\|GO:0141187_0.665\|GO:0016070_0.664\|GO:0032774_0.664\|GO:0019219_0.647\|GO:0051252_0.641\|GO:0032501_0.639\|GO:0006351_0.638\|GO:2001141_0.636\|GO:0006355_0.632\|GO:0043226_0.631\|GO:0097159_0.625\|GO:0016020_0.622\|GO:0048518_0.621\|GO:0043229_0.619\|GO:0048522_0.608\|GO:0043227_0.581\|GO:0003676_0.580\|GO:0032502_0.575\|GO:0048856_0.575\|GO:0007275_0.570\|GO:0043231_0.565\|GO:0003677_0.545\|GO:0043565_0.545\|GO:0009893_0.531\|GO:0005634_0.530\|GO:0010604_0.517\|GO:0031325_0.517\|GO:0003690_0.513\|GO:1990837_0.513\|GO:0009891_0.512\|GO:0031328_0.512\|GO:0010557_0.502	IPR001628+36-107_36-111_38-105_39-55_39-65_55-70_88-96_96-104+\|IPR013088+32-132+\|IPR035500+223-327+\|IPR052499+34-344+	SM00399+36-107+	PF00105+38-105+Zinc_finger,_C4_type_(two_domains)	—	PTHR47630+34-344+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	—	—	1.000	1-360	4iqr_F	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.853	39840.420	7.544	6.500	24.722	10.556	44.167	55.833	13.889	10.833	53.611

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	black	magenta	166.963	523.610	158.536	120.800	23.081	13.739	16.428	61.173	9.675	379.195	220.829

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-1.955	-2.253	-0.282	-2.419	-0.734	—	2.059	-1.755	-5.470	—	—	—	—

No JSON data available for plots.

Back to Browser