Hg_chrom8_TN10mRNA_15940
Organism: Heterodera glycines Gene Locus: chr8:6499954-6502598 Feature type: polypeptideProtein Sequence
Length: 472
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.764 | 1.035 | 0.732 | 1.753 | 1.201 | 0.761 | 0.984 | 0.847 | 0.424 | 1.546 | 0.546 | 2.243 | 1.177 | 0.896 | 1.73 | 1.029 | 0.59 | 1.091 | 0.652 | 0.81 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_15066
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
10-Pre_planta
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— | — | — | — |
41-73
|
0.859
|
— | — |
0.000
|
— | — |
0.756
|
0.093
|
0.025
|
0.429
|
0.049
|
0.044
|
0.036
|
0.008
|
0.085
|
0.046
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004792
|
2.000
|
1.000
|
Hsc_gene_6397.t1
|
Hsc_gene_6397.t1
|
— |
Q21006.3 Nuclear hormone receptor family member nhr-34 [Caenorhabditis elegans]
|
KAI6224940.1 Zinc finger and Nuclear hormone receptor domain containing protein [Aphelenchoides besseyi]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
GO:0003700|GO:0006355|GO:0008270|GO:0043565
|
GO:0008150_0.939|GO:0009987_0.865|GO:0065007_0.858|GO:0050789_0.845|GO:0050794_0.836|GO:0003674_0.790|GO:0005575_0.779|GO:0110165_0.779|GO:0005488_0.747|GO:0008152_0.731|GO:0043170_0.731|GO:0009058_0.729|GO:0044237_0.723|GO:0044249_0.723|GO:0009059_0.721|GO:0019222_0.717|GO:0031323_0.717|GO:0044238_0.715|GO:0060255_0.713|GO:0010467_0.710|GO:0080090_0.699|GO:0009889_0.691|GO:0010556_0.691|GO:0031326_0.691|GO:0005622_0.688|GO:0010468_0.679|GO:0006139_0.676|GO:0034654_0.673|GO:0090304_0.670|GO:0141187_0.670|GO:0016070_0.669|GO:0032774_0.669|GO:0019219_0.659|GO:0006351_0.647|GO:0051252_0.647|GO:2001141_0.642|GO:0006355_0.638|GO:0097159_0.638|GO:0016020_0.636|GO:0032501_0.630|GO:0043226_0.629|GO:0043229_0.611|GO:0048518_0.593|GO:0003676_0.583|GO:0048522_0.582|GO:0043227_0.576|GO:0032502_0.562|GO:0043231_0.561|GO:0048856_0.561|GO:0003677_0.550|GO:0043565_0.550|GO:0007275_0.539|GO:0009893_0.507
|
IPR000536+231-469_264-448_267-440+|IPR001628+36-107_36-111_38-105_39-55_39-65_55-70_88-96_96-104+|IPR013088+32-132+|IPR035500+232-466_234-459+|IPR052499+34-469+
|
SM00399+36-107+|SM00430+267-440+
|
PF00104+264-448+Ligand-binding_domain_of_nuclear_hormone_receptor|PF00105+38-105+Zinc_finger,_C4_type_(two_domains)
|
— |
PTHR47630+34-469+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-472
|
4iqr_F
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.811
|
52698.720
|
7.761
|
8.000
|
25.000
|
9.534
|
43.220
|
56.780
|
13.771
|
11.229
|
51.059
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
magenta
|
166.963
|
523.610
|
158.536
|
120.800
|
23.081
|
13.739
|
16.428
|
61.173
|
9.675
|
379.195
|
220.829
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.955
|
-2.253
|
-0.282
|
-2.419
|
-0.734
|
— |
2.059
|
-1.755
|
-5.470
|
— | — | — | — |
No JSON data available for plots.