Hg_chrom8_TN10mRNA_15941
Organism: Heterodera glycines Gene Locus: chr8:6502872-6504545 Feature type: polypeptideProtein Sequence
Length: 521
(Signal peptide: 1-21)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.803 | 0.937 | 0.593 | 0.794 | 2.943 | 1.329 | 1.142 | 0.576 | 0.725 | 0.648 | 1.774 | 0.452 | 0.906 | 0.849 | 1.724 | 0.685 | 0.472 | 0.582 | 0.738 | 0.226 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_15067
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
— | — | — | — | — |
8-Eggs_J4_Males
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
— |
extracellular
|
nucleus
|
KRKQEEEKRREEKRQREEERAKGGEKNRKGEEKNREEEEKKKEEETESVLKREQLKKAGKAAEEKREWEKDSANIGEKVQKEWRKRENEKEKEEREEEEGEEKERERKKNGKGREEKEEEKPKEEREKEEGEEKERERKKNGKEREKKEEEKPK
|
— | — | — | — |
1-21
|
0.872
|
0.998
|
0.000
|
0.000
|
0.217
|
0.246
|
0.063
|
0.346
|
0.098
|
0.021
|
0.080
|
0.014
|
0.178
|
0.857
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012174
|
1.000
|
1.000
|
Hsc_gene_6398.t1
|
Hsc_gene_6398.t1
|
— | — |
KJH48518.1 shTK domain protein [Dictyocaulus viviparus]
|
No
|
-0.280
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — |
IPR003582+387-422_387-423_388-422_458-496_458-497_459-496+
|
SM00254+387-423_458-497+
|
PF01549+387-422_458-496+ShK_domain-like
|
— |
PTHR21724+380-498+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-390;509-521
|
1.000
|
391-508
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.668
|
59144.780
|
6.337
|
-1.000
|
42.226
|
6.142
|
59.117
|
40.883
|
21.305
|
20.921
|
42.035
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
purple
|
grey
|
469.613
|
205.892
|
33.831
|
14.221
|
84.851
|
249.390
|
19.470
|
166.496
|
23.198
|
1746.854
|
1008.144
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-2.836
|
-3.989
|
-1.137
|
2.540
|
1.571
|
-3.669
|
-0.696
|
-2.951
|
-6.347
|
— | — | — | — |