Hg_chrom8_TN10mRNA_15942
Organism: Heterodera glycines Gene Locus: chr8:6504933-6515972 Feature type: polypeptideProtein Sequence
Length: 1,672
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.036 | 1.029 | 0.729 | 0.598 | 2.053 | 1.564 | 0.598 | 1.017 | 0.784 | 1.253 | 0.752 | 1.337 | 0.897 | 0.426 | 2.051 | 1.145 | 0.706 | 0.807 | 0.644 | 0.422 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_15068
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
30-Not_Clustered
|
0.898
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm
|
— |
RKRR,KKEQEQSQRMEFEMRKVRG
|
— | — | — | — | — | — |
0.000
|
— | — |
0.190
|
0.209
|
0.027
|
0.690
|
0.060
|
0.105
|
0.222
|
0.012
|
0.257
|
0.079
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004793
|
1.000
|
2.000
|
Hsc_gene_6399.t1;Hsc_gene_6399.t2
|
Hsc_gene_6400.t1
|
— |
P24733.1 Myosin heavy chain, striated muscle [Argopecten irradians]
|
KAI1725155.1 myosin head (motor domain) domain-containing protein [Ditylenchus destructor]
|
No
|
-0.180
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003774|GO:0005524|GO:0016459
|
GO:0005575_0.909|GO:0110165_0.903|GO:0005622_0.852|GO:0043226_0.810|GO:0008150_0.809|GO:0043229_0.765|GO:0005737_0.673|GO:0043228_0.647|GO:0043232_0.645|GO:0009987_0.619|GO:0032501_0.552|GO:0099080_0.546|GO:0003674_0.541|GO:0099081_0.516|GO:0099512_0.515|GO:0032991_0.506
|
IPR001609+165-898_169-897_172-885_199-218_258-283_313-340_576-604_631-659+|IPR027417+153-957+|IPR036961+173-824+
|
SM00242+165-898+
|
PF00063+172-885+Myosin_head_(motor_domain)
|
— |
PTHR13140+147-1275+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-89;977-1672
|
1.000
|
90-976
|
1sr6_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.507
|
190790.970
|
6.307
|
-5.000
|
33.373
|
7.536
|
56.220
|
43.780
|
17.045
|
16.328
|
43.959
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
darkgreen
|
913.585
|
437.731
|
643.896
|
748.821
|
687.976
|
638.635
|
401.444
|
601.203
|
2566.161
|
512.424
|
1392.597
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.328
|
0.638
|
0.326
|
-0.154
|
— |
-0.658
|
— |
-0.438
|
2.204
|
— | — | — | — |
No JSON data available for plots.