SCN Proteipedia

Hg_chrom8_TN10mRNA_15944

Organism: Heterodera glycines Gene Locus: chr8:6524360-6526832 Feature type: polypeptide

Protein Sequence

Length: 350

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.565	0.93	0.935	0.197	1.714	1.392	0.578	1.286	1.333	1.776	1.039	1.681	0.873	0.385	1.633	1.184	0.843	0.563	0.22	0.84	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom8_TN10gene_15070	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	24-Not_Clustered	0.824

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	transmembrane_domain\|mitochondrial_transit_peptide	mitochondrion	—	—	—	—	—	—	—	—	0.000	—	—	0.098	0.923	0.033	0.173	0.238	0.084	0.212	0.164	0.096	0.008

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0012175	1.000	1.000	Hsc_gene_6402.t1	Hsc_gene_6402.t1;Hsc_gene_6402.t2	—	Q96ER9.2 Mitochondrial potassium channel [Homo sapiens]	KAI6175371.1 Coiled-coil domain-containing protein 51 [Aphelenchoides bicaudatus]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	—	GO:0005575_0.948\|GO:0110165_0.946\|GO:0008150_0.944\|GO:0016020_0.914\|GO:0009987_0.907\|GO:0005622_0.889\|GO:0043226_0.864\|GO:0051179_0.843\|GO:0043229_0.841\|GO:0006810_0.830\|GO:0051234_0.830\|GO:0005737_0.810\|GO:0003674_0.809\|GO:0043227_0.806\|GO:0043231_0.781\|GO:0055085_0.708\|GO:0006811_0.700\|GO:0032991_0.700\|GO:0034220_0.694\|GO:0098660_0.688\|GO:0006812_0.686\|GO:0098655_0.686\|GO:0030001_0.684\|GO:0098662_0.683\|GO:0006813_0.674\|GO:0071805_0.670\|GO:0005215_0.664\|GO:0022857_0.663\|GO:0015075_0.662\|GO:0005216_0.661\|GO:0015267_0.661\|GO:0022803_0.661\|GO:0008324_0.659\|GO:0005261_0.657\|GO:0015318_0.657\|GO:0022836_0.657\|GO:0022890_0.656\|GO:0046873_0.656\|GO:0015276_0.655\|GO:0022834_0.655\|GO:0005267_0.650\|GO:0015079_0.650\|GO:0031090_0.650\|GO:0035381_0.650\|GO:0062156_0.650\|GO:0099094_0.650\|GO:0098796_0.599\|GO:0031967_0.573\|GO:0005739_0.559\|GO:0005740_0.550\|GO:0031966_0.550\|GO:0019866_0.548\|GO:1990351_0.548\|GO:0005743_0.547\|GO:1902495_0.546\|GO:0034702_0.545\|GO:0065007_0.542\|GO:0034703_0.540\|GO:0034705_0.540\|GO:0062157_0.540	IPR037660+35-349+	—	—	—	PTHR28624+35-349+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	—	—	1.000	1-350	—	—

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.544	40482.120	6.980	2.500	32.857	8.857	55.714	44.286	17.429	15.429	38.571

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	grey60	lightcyan	768.160	444.885	509.845	790.397	991.435	694.460	966.540	589.518	1041.264	709.595	851.739

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	—	0.692	0.743	0.295	-0.499	0.489	-0.343	0.858	—	—	—	—	—

No JSON data available for plots.

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