Hg_chrom8_TN10mRNA_15946
Organism: Heterodera glycines Gene Locus: chr8:6531604-6532168 Feature type: polypeptideProtein Sequence
Length: 113
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.72 | 1.029 | 0.644 | 0.61 | 1.327 | 0.681 | 0.843 | 0.442 | 1.377 | 0.957 | 2.011 | 1.041 | 1.229 | 1.361 | 0.722 | 0.885 | 1.016 | 0.67 | 1.361 | 1.041 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_15072
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
17-Not_Clustered
|
0.734
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.307
|
0.551
|
0.058
|
0.713
|
0.530
|
0.212
|
0.114
|
0.092
|
0.443
|
0.090
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012177
|
1.000
|
1.000
|
Hsc_gene_6404.t1
|
Hsc_gene_6404.t1
|
— |
P92504.3 Cytochrome c type-1 [Ascaris suum]
|
ACG69807.1 putative cytochrome c [Haemonchus contortus];ACG69808.1 putative cytochrome c [Haemonchus contortus]
|
No
|
-0.100
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0009055|GO:0020037
|
GO:0005575_0.866|GO:0110165_0.823|GO:0008150_0.793|GO:0005622_0.716|GO:0005737_0.663|GO:0009987_0.661|GO:0043226_0.651|GO:0043229_0.650|GO:0003674_0.645|GO:0016020_0.635|GO:0043227_0.598|GO:0043231_0.598|GO:0005488_0.549|GO:0008152_0.531
|
IPR002327+5-105_20-27_32-47_48-58_62-78_81-91_98-106+|IPR009056+8-108_11-105+|IPR036909+1-106_7-104+
|
— |
PF00034+11-105+Cytochrome_c
|
G3DSA:1.10.760.10:FF:000001+4-109+Cytochrome_c_iso-1
|
PTHR11961+5-105+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-1
|
1.000
|
2-113
|
9mt1_B
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.808
|
12750.740
|
9.873
|
6.500
|
29.204
|
10.619
|
48.673
|
51.327
|
17.699
|
11.504
|
46.903
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
grey
|
11057.606
|
6100.327
|
12174.443
|
8867.585
|
9104.584
|
8927.268
|
7886.784
|
9900.435
|
21569.578
|
8589.309
|
14152.281
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.767
|
0.403
|
-0.349
|
— | — | — | — | — | — | — | — | — | — |
No JSON data available for plots.