Hg_chrom8_TN10mRNA_15947
Organism: Heterodera glycines Gene Locus: chr8:6532364-6533252 Feature type: polypeptideProtein Sequence
Length: 181
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.707 | 1.028 | 0.603 | 0.762 | 0.645 | 1.133 | 0.592 | 2.21 | 1.351 | 0.448 | 1.256 | 1.95 | 1.381 | 0.956 | 2.142 | 0.789 | 1.087 | 1.256 | 0.85 | 0.975 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_15073
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
5-Not_Clustered
|
0.806
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm
|
— | — |
33-57
|
0.986
|
28-63
|
0.978
|
— | — |
0.000
|
— | — |
0.370
|
0.140
|
0.037
|
0.575
|
0.158
|
0.083
|
0.033
|
0.001
|
0.123
|
0.045
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012178
|
1.000
|
1.000
|
Hsc_gene_6405.t1
|
Hsc_gene_6405.t1
|
— |
O44480.2 Large ribosomal subunit protein eL20 [Caenorhabditis elegans]
|
KAI3411919.1 60S ribosomal protein L20 [Globodera pallida]
|
No
|
-0.120
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003735|GO:0005840|GO:0006412
|
GO:0005575_0.879|GO:0110165_0.863|GO:0005622_0.761|GO:0005737_0.680|GO:0043226_0.677|GO:0043229_0.677|GO:0003674_0.633|GO:0005829_0.575|GO:0008150_0.566|GO:0043228_0.561|GO:0043232_0.561
|
IPR021138+4-180_5-180+|IPR023573+10-133+|IPR028877+10-73+
|
— |
PF01775+10-133+Ribosomal_proteins_50S-L18Ae/60S-L20/60S-L18A
|
G3DSA:3.10.20.10:FF:000001+76-151+60S_ribosomal_protein_L18a|G3DSA:3.10.20.10:FF:000002+5-75+60S_ribosomal_protein_L18a
|
PTHR10052+4-180+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
151-181
|
1.000
|
1-150
|
9cai_CS
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.765
|
21077.440
|
11.084
|
25.000
|
30.387
|
13.812
|
51.381
|
48.619
|
23.204
|
7.182
|
46.409
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
sienna3
|
9845.494
|
4542.636
|
7323.985
|
10835.512
|
10212.151
|
8149.594
|
6513.560
|
4525.637
|
15444.701
|
11951.857
|
13448.790
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.460
|
1.117
|
0.673
|
-0.118
|
-0.310
|
-0.313
|
-0.956
|
0.669
|
— | — | — | — | — |
No JSON data available for plots.