Hg_chrom8_TN10mRNA_15948
Organism: Heterodera glycines Gene Locus: chr8:6534517-6537063 Feature type: polypeptideProtein Sequence
Length: 294
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.475 | 0.949 | 1.175 | 0.352 | 1.304 | 1.657 | 0.283 | 0.68 | 0.907 | 1.379 | 1.031 | 1.801 | 1.795 | 0.981 | 1.527 | 1.069 | 1.004 | 0.773 | 1.047 | 0.9 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_15074
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
2-Not_Clustered
|
0.482
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
mitochondrial_transit_peptide
|
mitochondrion
|
— | — |
1-21
|
0.994
|
— | — | — | — |
0.000
|
— | — |
0.097
|
0.967
|
0.002
|
0.199
|
0.025
|
0.051
|
0.061
|
0.006
|
0.022
|
0.032
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012179
|
1.000
|
1.000
|
Hsc_gene_6406.t1
|
Hsc_gene_6406.t1
|
— | — |
KAI6236492.1 39S ribosomal protein L46, mitochondrial [Aphelenchoides besseyi]
|
No
|
0.170
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003735
|
GO:0005575_0.926|GO:0110165_0.919|GO:0005622_0.898|GO:0016020_0.861|GO:0043226_0.858|GO:0043229_0.833|GO:0043227_0.802|GO:0005737_0.797|GO:0043231_0.780|GO:0005739_0.561
|
IPR021757+29-127+|IPR040008+20-274+
|
— |
PF11788+29-127+39S_mitochondrial_ribosomal_protein_L46
|
— |
PTHR13124+20-274+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-294
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.583
|
34710.550
|
7.292
|
2.000
|
29.932
|
12.245
|
54.082
|
45.918
|
15.646
|
14.286
|
41.837
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
greenyellow
|
572.191
|
401.649
|
529.847
|
584.453
|
706.378
|
587.933
|
484.747
|
502.071
|
522.227
|
687.761
|
616.818
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.170
|
0.404
|
0.251
|
0.242
|
-0.250
|
-0.271
|
-0.332
|
— | — | — | — | — | — |
No JSON data available for plots.