Hg_chrom8_TN10mRNA_15950
Organism: Heterodera glycines Gene Locus: chr8:6540386-6542519 Feature type: polypeptideProtein Sequence
Length: 376
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.897 | 1.113 | 0.822 | 0.367 | 1.33 | 1.432 | 0.665 | 0.931 | 1.182 | 1.186 | 1.33 | 1.721 | 1.699 | 1.023 | 0.868 | 1.026 | 0.567 | 0.685 | 0.205 | 1.173 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_15076
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
15-Male
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_export_signal
|
cytoplasm|golgi_apparatus
|
— |
KKKK,KKEEEDISSCLKAREK,KKVSIAYSVLSDPNKRRQY,KKSEMQEFQKEYMDLKRKW
|
— | — | — | — | — | — |
0.000
|
— | — |
0.387
|
0.330
|
0.042
|
0.549
|
0.486
|
0.536
|
0.664
|
0.044
|
0.277
|
0.056
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012181
|
1.000
|
1.000
|
Hsc_gene_6408.t1
|
Hsc_gene_6408.t1
|
— |
Q9ZSY2.1 Chaperone protein dnaJ 15 [Arabidopsis thaliana]
|
KAI1729977.1 dnaJ domain-containing protein [Ditylenchus destructor]
|
No
|
-0.010
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.822|GO:0110165_0.814|GO:0008150_0.763|GO:0005622_0.737|GO:0016020_0.674|GO:0005737_0.665|GO:0043226_0.616|GO:0009987_0.581|GO:0043229_0.574|GO:0003674_0.567|GO:0043227_0.567|GO:0043231_0.521
|
IPR001623+11-69_12-66_12-74_12-77_14-32_32-47_49-69_69-88+|IPR018253+54-73+|IPR036869+1-86_9-105+|IPR052812+6-349+
|
SM00271+11-69+
|
PF00226+12-74+DnaJ_domain
|
— |
PTHR44272+6-349+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-376
|
4j80_D
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.748
|
42705.810
|
8.107
|
5.500
|
27.394
|
12.234
|
48.404
|
51.596
|
14.894
|
12.500
|
44.149
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
midnightblue
|
1863.572
|
1165.690
|
1316.301
|
1145.001
|
1389.755
|
1883.827
|
1609.657
|
3211.951
|
1630.110
|
2534.728
|
2147.034
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
-0.163
|
— |
0.247
|
0.453
|
-0.216
|
0.661
|
-0.852
|
— | — | — | — | — |
No JSON data available for plots.