Hg_chrom8_TN10mRNA_15951
Organism: Heterodera glycines Gene Locus: chr8:6545651-6547539 Feature type: polypeptideProtein Sequence
Length: 305
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.762 | 1.449 | 0.715 | 0.565 | 1.148 | 1.093 | 0.742 | 1.148 | 0.947 | 1.462 | 0.745 | 0.579 | 1.184 | 1.072 | 1.204 | 1.265 | 0.699 | 1.143 | 0.757 | 1.061 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_15077
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
29-Not_Clustered
|
0.807
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_export_signal
|
cytoplasm|nucleus
|
— |
RRECWKALERISKDKVR
|
— | — | — | — | — | — |
0.000
|
— | — |
0.541
|
0.420
|
0.068
|
0.761
|
0.203
|
0.291
|
0.152
|
0.034
|
0.109
|
0.081
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003388
|
2.000
|
1.000
|
Hsc_gene_6409.t1
|
Hsc_gene_6409.t1
|
— |
O94735.2 NADPH-dependent D-xylose reductase [Meyerozyma guilliermondii ATCC 6260]
|
KAI1725182.1 aldo/keto reductase family domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016491
|
GO:0008150_0.798|GO:0005575_0.717|GO:0110165_0.713|GO:0003674_0.679|GO:0005622_0.592|GO:0009987_0.569|GO:0003824_0.556|GO:0016020_0.548|GO:0005737_0.544|GO:0008152_0.518|GO:0016491_0.506
|
IPR018170+51-68+|IPR020471+9-303_13-296_47-71_109-127_153-170_187-216_226-250+|IPR023210+26-290+|IPR036812+3-302_16-302+
|
— |
PF00248+26-290+Aldo/keto_reductase_family
|
G3DSA:3.20.20.100:FF:000002+9-301+2,5-diketo-D-gluconic_acid_reductase_A
|
PTHR43827+13-296+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-5
|
1.000
|
6-305
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.827
|
34121.700
|
7.386
|
3.500
|
23.934
|
11.148
|
47.541
|
52.459
|
13.115
|
10.820
|
50.820
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
violet
|
579.050
|
334.099
|
394.339
|
479.621
|
659.280
|
605.814
|
866.235
|
642.444
|
196.854
|
892.514
|
594.374
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
0.384
|
0.392
|
0.427
|
— |
0.526
|
— |
0.575
|
— | — | — | — | — |
No JSON data available for plots.