SCN Proteipedia

Hg_chrom8_TN10mRNA_15953

Organism: Heterodera glycines Gene Locus: chr8:6549743-6555085 Feature type: polypeptide

Protein Sequence

Length: 586

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	1.429	1.389	1.055	0.706	0.995	1.181	0.752	1.109	0.91	1.015	0.517	1.205	1.327	0.82	1.637	1.17	0.56	0.931	1.313	0.351	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom8_TN10gene_15079	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	9-Migratory	1.000

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	—	mitochondrion	—	RRERLPSVSNFLAARRRSK	47-69	1.000	25-96	0.762	—	—	0.000	—	—	0.228	0.536	0.471	0.474	0.054	0.025	0.161	0.324	0.051	0.318

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0004795	1.000	2.000	Hsc_gene_6413.t1;Hsc_gene_6413.t2	Hsc_gene_6411.t1;Hsc_gene_6413.t1;Hsc_gene_6413.t2	—	P31335.1 Bifunctional purine biosynthesis protein ATIC [Gallus gallus]	KAI6229129.1 AICAR transformylase/inosine monophosphate cyclohydrolase [Aphelenchoides fujianensis]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0003824\|GO:0003937\|GO:0004643\|GO:0006164	GO:0003674_0.849\|GO:0008150_0.816\|GO:0009987_0.737\|GO:0008152_0.695\|GO:0005575_0.679\|GO:0110165_0.664\|GO:0044238_0.661\|GO:0003824_0.653\|GO:0044237_0.653\|GO:0009058_0.649\|GO:0006139_0.612\|GO:0016787_0.592\|GO:0034654_0.592\|GO:0044281_0.583\|GO:0005622_0.571\|GO:1901135_0.568\|GO:0006793_0.566\|GO:0006796_0.566\|GO:0019637_0.558\|GO:0006753_0.553\|GO:0055086_0.553\|GO:1901137_0.552\|GO:0009117_0.551\|GO:0072521_0.551\|GO:0090407_0.551\|GO:0006163_0.549\|GO:0016810_0.548\|GO:0006164_0.545\|GO:0006188_0.545\|GO:0006189_0.545\|GO:0009123_0.545\|GO:0009124_0.545\|GO:0009126_0.545\|GO:0009127_0.545\|GO:0009150_0.545\|GO:0009152_0.545\|GO:0009156_0.545\|GO:0009161_0.545\|GO:0009165_0.545\|GO:0009167_0.545\|GO:0009168_0.545\|GO:0009259_0.545\|GO:0009260_0.545\|GO:0019693_0.545\|GO:0046040_0.545\|GO:0046390_0.545\|GO:0072522_0.545\|GO:1901293_0.545\|GO:0003937_0.544\|GO:0016814_0.544\|GO:0019238_0.544\|GO:0005737_0.510\|GO:0016740_0.502	IPR002695+76-428_161-580_172-427+\|IPR016193+162-579+\|IPR024050+442-512+\|IPR024051+172-338_342-574+	SM00798+76-428+	PF01808+172-427+AICARFT/IMPCHase_bienzyme	G3DSA:3.40.140.20:FF:000003+172-338+Bifunctional_purine_biosynthesis_protein	PTHR11692+161-580+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	—	—	1.000	1-586	—	—

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.753	64649.630	7.086	4.500	25.427	9.898	47.611	52.389	13.652	11.775	54.437

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	cyan	lightgreen	509.370	175.384	1092.764	427.698	123.416	165.283	76.701	1331.640	51.494	917.540	546.378

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	2.411	1.149	-1.245	-1.823	0.434	-1.096	2.913	-3.976	-4.292	—	—	—	—

No JSON data available for plots.

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