Hg_chrom8_TN10mRNA_15954
Organism: Heterodera glycines Gene Locus: chr8:6551426-6552385 Feature type: polypeptideProtein Sequence
Length: 155
(Signal peptide: 1-24)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.825 | 0.9 | 0.938 | 3.337 | 1.183 | 0.993 | 0.922 | 0.645 | 1.434 | 1.133 | 0.587 | 2.277 | 1.613 | 0.496 | 1.053 | 0.829 | 0.635 | 0.489 | 1.489 | 0.949 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_15080
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
— |
extracellular
|
— | — | — | — | — | — |
1-24
|
0.991
|
0.783
|
0.000
|
0.000
|
0.460
|
0.397
|
0.051
|
0.410
|
0.314
|
0.072
|
0.133
|
0.013
|
0.103
|
0.665
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012183
|
1.000
|
1.000
|
Hsc_gene_6412.t1
|
Hsc_gene_6412.t1;Hsc_gene_6412.t2
|
— |
Q6L6Q6.1 Lysozyme [Crassostrea gigas]
|
QHW04443.1 lysozyme [Heterodera glycines]
|
No
|
0.070
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003796
|
GO:0008150_0.748|GO:0003674_0.727|GO:0050896_0.668|GO:0003824_0.600|GO:0016787_0.552|GO:0006950_0.551|GO:0044419_0.527|GO:0009605_0.522|GO:0016798_0.521|GO:0004553_0.520|GO:0009607_0.519|GO:0005575_0.517|GO:0043207_0.515|GO:0051707_0.515|GO:0110165_0.515|GO:0006952_0.513|GO:0003796_0.512|GO:0061783_0.512|GO:0098542_0.505
|
IPR008597+30-155_35-149_35-153+
|
— |
PF05497+35-149+Destabilase
|
— |
PTHR11195+35-153+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-155
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.613
|
17482.190
|
4.755
|
-4.000
|
22.581
|
12.258
|
40.000
|
60.000
|
10.323
|
12.258
|
49.032
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — |
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — | — | — | — | — | — |