Hg_chrom8_TN10mRNA_15958
Organism: Heterodera glycines Gene Locus: chr8:6565921-6569178 Feature type: polypeptideProtein Sequence
Length: 677
(Signal peptide: 1-29)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.756 | 0.756 | 0.994 | 0.968 | 1.428 | 1.098 | 1.213 | 1.329 | 0.788 | 1.078 | 0.828 | 1.39 | 1.108 | 1.136 | 1.206 | 1.013 | 1.308 | 0.492 | 1.023 | 0.434 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_15083
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
26-J3_J4
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
— |
cell_membrane
|
chloroplast|mitochondria
|
— |
50-72
|
0.925
|
— | — |
1-29
|
0.985
|
0.999
|
0.000
|
0.000
|
0.078
|
0.070
|
0.006
|
0.174
|
0.245
|
0.125
|
0.234
|
0.021
|
0.767
|
0.437
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012185
|
1.000
|
1.000
|
Hsc_gene_6420.t1
|
Hsc_gene_6420.t1
|
— | — |
KAI1715744.1 SGS domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — |
IPR000742+154-191_179-190_192-232_195-232_220-231+|IPR005018+304-441+|IPR045266+278-465+
|
SM00181+154-191_195-232+
|
— | — |
PTHR46901+18-328+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
451-677
|
1.000
|
1-450
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.667
|
74385.210
|
5.647
|
-9.000
|
28.065
|
9.453
|
50.665
|
49.335
|
14.032
|
14.032
|
52.437
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
purple
|
darkred
|
1860.793
|
897.840
|
169.509
|
198.034
|
3468.688
|
11961.142
|
432.370
|
875.766
|
64.220
|
1341.550
|
794.123
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-2.634
|
-2.317
|
0.334
|
4.099
|
1.802
|
-4.779
|
-3.883
|
-0.872
|
-4.529
|
— | — | — | — |