Hg_chrom8_TN10mRNA_15959
Organism: Heterodera glycines Gene Locus: chr8:6570592-6572159 Feature type: polypeptideProtein Sequence
Length: 209
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.001 | 1.558 | 1.305 | 0.495 | 1.037 | 0.491 | 0.456 | 1.435 | 1.063 | 0.776 | 0.942 | 1.407 | 1.595 | 1.104 | 0.976 | 1.572 | 1.098 | 0.507 | 0.736 | 1.126 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_15084
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
29-Not_Clustered
|
0.911
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— |
RPRR
|
— | — | — | — | — | — |
0.000
|
— | — |
0.549
|
0.250
|
0.004
|
0.747
|
0.068
|
0.037
|
0.050
|
0.364
|
0.237
|
0.078
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001745
|
4.000
|
0.000
|
0.000
|
Hsc_gene_6382.t1
|
— |
Q4TT88.1 Puromycin-sensitive aminopeptidase [Caenorhabditis elegans]
|
AAX68678.1 aminopeptidase [Heterodera glycines]
|
No
|
0.060
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0008237|GO:0008270
|
GO:0005575_0.838|GO:0110165_0.838|GO:0008150_0.768|GO:0003674_0.742|GO:0005622_0.682|GO:0016020_0.634|GO:0003824_0.610|GO:0043226_0.610|GO:0016787_0.594|GO:0140096_0.592|GO:0008233_0.574|GO:0043229_0.561|GO:0005737_0.545|GO:0043227_0.501
|
IPR014782+2-122+|IPR027268+1-129+|IPR050344+2-122+
|
— |
PF01433+2-122+Peptidase_family_M1_domain
|
— |
PTHR11533+2-122+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
131-209
|
1.000
|
1-130
|
8sw1_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.711
|
23496.080
|
5.938
|
-2.000
|
27.273
|
13.397
|
53.589
|
46.411
|
13.876
|
13.397
|
54.545
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
turquoise
|
127.028
|
46.107
|
79.283
|
77.714
|
129.375
|
145.643
|
105.718
|
88.103
|
4.980
|
300.035
|
173.583
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.549
|
0.616
|
— |
0.704
|
— |
-0.453
|
-0.831
|
0.405
|
-5.993
|
4.147
|
— | — | — |
No JSON data available for plots.