Hg_chrom8_TN10mRNA_15960
Organism: Heterodera glycines Gene Locus: chr8:6574081-6581030 Feature type: polypeptideProtein Sequence
Length: 1,338
(Signal peptide: 1-28)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.826 | 1.13 | 0.72 | 0.387 | 2.13 | 1.495 | 1.014 | 0.71 | 0.814 | 0.768 | 1.427 | 1.187 | 0.83 | 1.135 | 1.419 | 1.004 | 0.772 | 0.566 | 0.747 | 0.396 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_15085
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
26-J3_J4
|
0.991
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
membrane_bound
|
signal_peptide|transmembrane_domain
|
cell_membrane
|
nucleus
|
RMEKRKL,RKMVAMARERIRTRRH,KKHLENGKQEKGKKKQQ,KKYGREADREREERQWKK,KKGWREMGNGKETKQNRK,KKNGRKEQSKQENERKKED,KNGRKECERVKKEEKERNRLKK
|
— | — | — | — |
1-28
|
0.928
|
0.888
|
1.000
|
1.000
|
0.222
|
0.035
|
0.007
|
0.350
|
0.220
|
0.279
|
0.227
|
0.084
|
0.746
|
0.139
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004797
|
1.000
|
2.000
|
Hsc_gene_6421.t1;Hsc_gene_6421.t2
|
Hsc_gene_6421.t3
|
— | — |
KAH7725545.1 Protein F31C3.6 a [Aphelenchus avenae]
|
No
|
0.020
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — |
PTHR39387+41-355+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
470-1338
|
1.000
|
1-469
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.795
|
149807.890
|
6.913
|
4.500
|
34.529
|
6.726
|
56.951
|
43.049
|
17.788
|
16.741
|
46.936
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
purple
|
grey
|
2402.822
|
849.497
|
396.060
|
502.254
|
1830.683
|
2368.948
|
949.305
|
1967.079
|
279.775
|
6978.583
|
4107.665
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.331
|
-0.895
|
0.452
|
1.835
|
0.387
|
-1.310
|
— |
-0.913
|
-4.745
|
— | — | — | — |