Hg_chrom8_TN10mRNA_15964
Organism: Heterodera glycines Gene Locus: chr8:6587447-6594400 Feature type: polypeptideProtein Sequence
Length: 981
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.948 | 1.019 | 0.667 | 0.457 | 1.257 | 1.228 | 0.74 | 0.815 | 0.748 | 0.882 | 0.911 | 1.499 | 0.623 | 1.725 | 1.831 | 1.689 | 0.986 | 0.741 | 0.392 | 0.12 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_15087
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
10-Pre_planta
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm
|
— |
RRRR,REGKRRV,KRHSVPAEPSKVKSK,RKGKAKERVAEDGDKWRKM,RRRGRSAGRDGTGDRERTK,RRGRSAGRDGTGDRERTKK,RKIKNGRANATPKESKKTK
|
7-27
|
1.000
|
55-99
|
0.997
|
— | — |
0.000
|
— | — |
0.351
|
0.157
|
0.040
|
0.693
|
0.087
|
0.112
|
0.155
|
0.083
|
0.327
|
0.093
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000929
|
3.000
|
3.000
|
Hsc_gene_6423.t1;Hsc_gene_6423.t2;Hsc_gene_6423.t3
|
Hsc_gene_6423.t1;Hsc_gene_6423.t2;Hsc_gene_6423.t3
|
— | — |
KAH7696618.1 Protein F28E10.1 d [Aphelenchus avenae]
|
No
|
-0.270
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
47-915;974-981
|
2.000
|
1-46;916-973
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.964
|
107101.500
|
10.491
|
45.000
|
27.829
|
4.791
|
54.842
|
45.158
|
16.616
|
11.213
|
55.454
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
4151.940
|
9319.787
|
5790.632
|
2588.201
|
976.240
|
1226.733
|
919.937
|
3260.710
|
1747.381
|
7823.361
|
5219.370
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.916
|
-1.986
|
-1.053
|
-1.439
|
0.344
|
-0.405
|
1.308
|
-1.684
|
-2.271
|
— |
-2.653
|
— | — |
No JSON data available for plots.