Hg_chrom8_TN10mRNA_15967
Organism: Heterodera glycines Gene Locus: chr8:6600370-6602227 Feature type: polypeptideProtein Sequence
Length: 174
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.601 | 0.802 | 1.149 | 0.991 | 1.916 | 1.326 | 0.753 | 1.437 | 0.894 | 1.01 | 0.958 | 0.338 | 1.756 | 0.884 | 1.056 | 0.903 | 1.036 | 1.132 | 0.442 | 0.338 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_15089
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
11-Not_Clustered
|
0.923
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.274
|
0.367
|
0.040
|
0.582
|
0.137
|
0.210
|
0.146
|
0.039
|
0.455
|
0.101
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004798
|
2.000
|
1.000
|
Hsc_gene_6425.t1
|
Hsc_gene_6425.t1;Hsc_gene_6425.t2
|
— |
Q9XVI9.1 Myosin-2 essential light chain [Caenorhabditis elegans]
|
KAI3411902.1 Myosin-2 essential light chain [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005509
|
GO:0008150_0.828|GO:0005575_0.813|GO:0110165_0.807|GO:0005622_0.765|GO:0043226_0.651|GO:0043229_0.634|GO:0003674_0.609|GO:0005737_0.601|GO:0009987_0.562
|
IPR002048+6-41_10-70_80-115_84-142+|IPR011992+5-145+|IPR050230+4-144+
|
— |
PF13499+10-70+EF-hand_domain_pair
|
G3DSA:1.10.238.10:FF:000178+1-146+Calmodulin-2_A
|
PTHR23048+4-144+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
150-174
|
1.000
|
1-149
|
6ysy_B
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.781
|
19649.940
|
4.656
|
-8.500
|
32.184
|
10.920
|
53.448
|
46.552
|
14.368
|
17.816
|
48.851
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
skyblue
|
grey
|
1055.621
|
1124.774
|
865.750
|
1107.323
|
1334.463
|
1272.244
|
1244.137
|
727.549
|
733.019
|
1189.989
|
994.145
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.607
|
-0.160
|
0.463
|
0.237
|
— | — |
-0.910
|
0.916
|
— | — | — | — | — |
No JSON data available for plots.